XLOC_028564 (si:dkey-21h14.3)


Basic Information

Item Value
gene id XLOC_028564
gene name si:dkey-21h14.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11079058 ~ 11081961 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055411
GTCATCTGACATGTTCAGCATCATCTCACCAGActcatgtTCCTCTTAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTATACCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGAAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAAGAAGCACACTAACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGACTTGCCGGATATATCAGTGTCCACTACTCCTGCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTGGTCCAGAAACTCTCCCAGTCCCCCcagtgctggtgattgttctgggAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAGCTCTTTCTAAGAGGAGACACAGAACCACCACTGAGGCCGTTTATGAGGAGATtcagcacaaacacaaacacttcaCTCACAGGGGGAGATTCAATTCTGAAGAACTGCAATCTGGGTATGAAGATGCAGACGAGTTTCTCTCAGAAAAAGAGTTCAAGACGGCTTATTATGATGATGTCACCAGCAACAGTGGTCTAGAAGAAAATATGGTGAAGGAAATCACTCCAGGATATTATGATGATGTCATCGCTGACGGCTTGAAGCCAGATCTAGAGACAGAAGACAGACCTGAGAGTTATGATGATGTCATGATGAGTGAAGAGACCTCTATTATTAAAAAAGTGGACAATCCAGAGTATTATGATGATGTCATTATTAATGGACAGAACCTTGATCATTTAACAGAGGGAGATCAGGAAGAGTATGATGATGTGAAGAACAACAATGAAGATGAGAGAAACCTCTTGGACTATGATGATGTAGAGGAGGAGTCAACTAATGAGGGAGGGGTCATATGAATCAGTGGCCACACCCACAGTCTCTGTTGATGAAATCACATTGTATTTACTGGAGATACTGAGAGTTTCTTATATTACTATTGCATAAGTGCTGTTTTATCTAAtttgattttatatatgtataatctTATGTGCTTTGCaaatttcaata

Function

symbol description
si:dkey-21h14.3 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-92 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000096047

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055411 True 1236 mRNA 0.46 11 11079058 11081961

Neighbor

gene id symbol gene type direction distance location
XLOC_028563 si:dkey-21h14.12 coding downstream 1186 11070864 ~ 11077872 (-)
XLOC_028562 si:dkey-21h14.15 coding downstream 11727 11066785 ~ 11067331 (-)
XLOC_028561 si:dkey-21h14.8 coding downstream 14985 11054309 ~ 11064073 (-)
XLOC_028560 mettl25 coding downstream 25515 11035103 ~ 11053543 (-)
XLOC_028559 si:ch211-161n3.3 coding downstream 54214 10959442 ~ 11024844 (-)
XLOC_028565 si:dkey-21h14.12 coding upstream 2248 11084209 ~ 11098539 (-)
XLOC_028566 si:dkey-21h14.12 coding upstream 17080 11099041 ~ 11106856 (-)
XLOC_028567 si:dkey-21h14.10 coding upstream 30619 11112580 ~ 11122638 (-)
XLOC_028568 BX784029.1 coding upstream 42652 11124613 ~ 11132617 (-)
XLOC_028569 prmt8b coding upstream 62639 11144600 ~ 11165961 (-)
XLOC_028555 NA non-coding downstream 243438 10766014 ~ 10835620 (-)
XLOC_028556 NA non-coding downstream 293404 10771874 ~ 10785654 (-)
XLOC_028554 NA non-coding downstream 326117 10748977 ~ 10752941 (-)
XLOC_028553 BX897748.1 non-coding downstream 417381 10661561 ~ 10661677 (-)
XLOC_028551 NA non-coding downstream 730446 10346738 ~ 10348612 (-)
XLOC_028570 BX784029.2 non-coding upstream 97548 11179509 ~ 11186936 (-)
XLOC_028571 BX649349.2 non-coding upstream 163371 11245332 ~ 11248285 (-)
XLOC_028574 NA non-coding upstream 524797 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 non-coding upstream 526235 11608196 ~ 11608283 (-)

Expression


Co-expression Network