G940102


Basic Information

Item Value
gene id G940102
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8374506 ~ 8377928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1072199
acccaccctcgtcacaccctgacctgaccaaaataatacagaaaacatagataactaaggtcagggcgtgacagatacaGTCTGTCACTTCATGATGGGTCGACTTTGTGATCATATTACCTTATTTGGGCATGAGGAAGGATAAACGTATTAATTGTCTGTCTAATGTACATCGGATTGTTAAGAGCATTGGTGAACAcagcacacactcatacacacactctctcacacacacacacacacacattcactctcacactcatacacacacacacacacactcacacactctctcttacacacacacacacacacattcactctaacactcacactcacactcacactcacacacacacacacactcacacactctctcttacacacacacacacacacattcactctaacactcacactcacactcacactcacacacacactcacacactctctcttacacacacacacacacacattcactctaacactcacactcacactcacacacacacacactcacacactctctcttacacacacacacacacacattcacactcatacacacacacacacacacattcactctaacactcacactcacacacacatcgaGGGTGAGAGCCAGCTGGTGGGTGTGAGGTGACCGCATACAGTTTTCCCTTGTCTGTGTGGGGATTACGGAGCGGTCCAATCCCCTCCATGGGCCACTCTCCTGTGGTGTGATGGCTCAGAGATCAATGACGGCTAGACTGAACACTCACTCGCGTGTCCACAACACAGTACTATATATAGTTTGCAGAGGCTGTCGCCAACCTAGCTAACCCTGTGTGTCAACGCCAACCCAGCGCCAGTCACTGACTACATACCCAGGTGAGGGTAAGGACATGGGGCGGGGCAGGGCAGAGCTAGGATAGGGTTAAGAAGAAGGGAACATTTGACTTGAAGGTGCCCTGTAAGTTTTGAGAAGGAGCGTTCCGTGTGTACTGTAGTCATGTTGAATGGTGTGTCTTTTGGGTGGGGTAATCAGTTACAACCTTGttgattctttaaaaaaaatgttaattcGTCAAAACAAAATGGATTCCTGCTTTCTAACGACAGGGTCACTGCTGAGCTGCTTAAACTATGGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAAACTATAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAATCTACAGTACTGAAATGTACACAGGGTCACTGCTGAGCTGATTCAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTCAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAATCTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAATCTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAAACTATAGTACTGAAATATACACAGGGTCACTGCTGAGCTGCTTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGCTGAGCTGATTAAACTACAGTACTGAAATATACACAGGGTCACTGATGACATTCAAAATAGGAGTTAAAGCACAATCAACACGTTTGCTTTTCATTCAATTCAACTCTACCAAAAGTTATATCATTAAACCTTACTGAAGCagtcatttttaattaattcCTAGTTAAACAGTCATTGTTTGCGCATCTACTGAAACAGTCATTGTATTCATTCCTACTTAAAcagggcgaatgtcgtgccttaGATACCAACACAACaactctcatttctctctcctccaatttctccaTCAACTTACTGacggtctctgactctctccgttcactctcctccaatttctccaTGTTCTTCCAGATTGGCTCTGGCTCACTCCTCAGCTCCGCCGACCACCCTGTGTTCTCCCCCCTAAAAAAATAATTTGGGGCTGTTTTTTGGGGCTTTCGTTGTGCCCGCGAACCCCGGAGTTGTCTcagtcctcccttctctccttgcgTCTGCTTCCAAGGAAGGCTTTCGTCTCCTGCCattatttcctcccaagtccaggatgtcTTCTCCTCCttgatctcctcccaagtccaggatgtcTTCTCCTCCTTGATCTCCTCTCAAGCCCAGGATACCTTCTCCTCCTTgttctcctcccaagtccaggatatcCTCTCCTCCTTGTTCTTCTCCCAAGCCCAGGATACCttctcctcctgggcacgctgcttggtcctgttgttgtgggatcttctgtcacgatcgtcgtaagaacattcggaccaaagcgcagcgtgaaatCGGTTCGACATTTTTATTATAAGTGAACCgcacaaaaaaaacaataaacaataaacgaTACGTGACGctatggagtgctcacaggcaactacacaaaaacaagatcccacaaaacaccgtggggaaatggctgcctaaatatgatccccaatcagagacaacgataaa

Function

NR:

description
PREDICTED: leucine-rich repeat extensin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1072199 True 2613 TUCP 0.45 3 8374506 8377928

Neighbor

gene id symbol gene type direction distance location
LOC118937462 NA coding upstream 36866 8294346 ~ 8337640 (+)
LOC110535212 LOC106579665 coding upstream 148468 8195607 ~ 8379328 (+)
LOC118937436 NA coding upstream 198721 8174793 ~ 8175785 (+)
LOC110536601 NA coding upstream 200481 8171872 ~ 8174025 (+)
LOC110535207 LOC106579684 coding upstream 402695 7969927 ~ 7971811 (+)
LOC110536544 LOC106590277 coding downstream 3442 8379847 ~ 8497020 (+)
LOC110535213 LOC106579667 coding downstream 272510 8650438 ~ 8685656 (+)
LOC110535219 NA coding downstream 421612 8799540 ~ 8802257 (+)
LOC118937463 NA coding downstream 467637 8845565 ~ 8855476 (+)
LOC110535221 LOC106579618 coding downstream 479178 8857106 ~ 8860218 (+)
G940087 NA non-coding upstream 23167 8350382 ~ 8351339 (+)
G939970 NA non-coding upstream 218890 8155402 ~ 8155616 (+)
G939686 NA non-coding upstream 244133 8130061 ~ 8130373 (+)
G939660 NA non-coding upstream 288169 8084736 ~ 8086337 (+)
G939597 LOC106603998 non-coding upstream 318617 8046947 ~ 8055889 (+)
G940105 NA non-coding downstream 10092 8388020 ~ 8388242 (+)
G940108 NA non-coding downstream 19644 8397572 ~ 8397803 (+)
G940110 NA non-coding downstream 23441 8401369 ~ 8401606 (+)
G940233 NA non-coding downstream 32190 8410118 ~ 8410328 (+)
G940234 NA non-coding downstream 32504 8410432 ~ 8410666 (+)
G939690 NA other upstream 233923 8140266 ~ 8140583 (+)
G939544 NA other upstream 551189 7820520 ~ 7823317 (+)
G939408 NA other upstream 799597 7574352 ~ 7574909 (+)
G938723 NA other upstream 1353082 7019151 ~ 7021424 (+)
G937889 NA other upstream 2252237 6121584 ~ 6122269 (+)
G940247 NA other downstream 61552 8439480 ~ 8439775 (+)
G940313 NA other downstream 154612 8532540 ~ 8540867 (+)
G940376 NA other downstream 273576 8651504 ~ 8652993 (+)

Expression

G940102 Expression in all Baseline Samples

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G940102 Expression in each Bioproject

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G940102 Expression in each Sample
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Co-expression Network