XLOC_028568 (BX784029.1)


Basic Information

Item Value
gene id XLOC_028568
gene name BX784029.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11124613 ~ 11132617 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055415
GAACACAACTactatttttaaaaacctttgcATGCTCAAAATGCATTTTGTGCACGTCATTTATGAGGAAAATGATCCTTAAAGTGTTAAAGATCAAGTGTTTTATAATATAACCAACATCACTAATATCAGtgttagtaatattattgataatattgaTTAGAGGGAGATCAGGAGGAATATGATGATGTGAGTGAAGATGTGACAAACCTGCTGGATTATGATGATGTGGACGAGGAGTTAAATGAAGAGGGAGAGACATTTGGGTCAACAATCAAACCCAGTTATTTGCTTCAACAGATTTGATCACTGAGAACTCAAGAGTGATATTGTAACTGATATCTCTGATATatcttttataataattttatgattattttatgataaaaaagttattaaagttatatatttgatgtgatttttttattcagctttgttCATTGCAATAAAAATCTTGTTTAGGC
>TCONS_00055416
ACATGACTCACCTCCAGTATGAACATATCTCAGCTTAACATGCTGTGTGTTGATGCAGAAGAGAAGATGAAGGAAAATACACTGGGATACTATGATGATGTCATCACTGATGGACTGAAGCCAGATTATGAGACAGAAAACACACCTGAGAGCTATGATGATGTCATGACCAGTGAACAGAGCTCTATTACGAAAGTGAACACAGCAGAGAGTTATGATGATGTCATCATTAATGGACAGAGGGAAACAGAGGGAGATCAGGAGGAATATGATGATGTGAGTGAAGATGTGACAAACCTGCTGGATTATGATGATGTGGACGAGGAGTTAAATGAAGAGGGAGAGACATTTGGGTCAACAATCAAACCCAGTTATTTGCTTCAACAGATTTGATCACTGAGAACTCAAGAGTGATATTGTAACTGATATCTCTGATATatcttttataataattttatgattattttatgataaaaaagttattaaagttatatatttgatgtgatttttttattcagctttgttCATTGCAATAAAAATCTTGTTTAGGC
>TCONS_00055417
CAGAGAAGAAACTTATGCATGTGTTCTGAGTTGATGAAATAGTTTGTGTTGTGCTGGAGGATATGATGGGGAAACTGATGCTGATGCTTTTGATGTTTACTGTAAAACTCATCACATCTGACAGTGTAAATGTGAGGTTGGTGAACGGCAATAACCCCTGTGCTGGTCGAGTGGAGGTTCTTGGAAGTCAGTGGGGAACAGTGTGTCAACGGGGTTGGGATGTTGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAATGGCTGTAACACCAACATATAATGCTCACTTTGGACAAGGAACAGGATCAATTTCAATGGCTTATGTACGCTGCCGTGGATCAGAGACTTCACTGAAAGACTGTAAATCAAACAGGTATACAGGTTTCTGTAATCATGCTGAAGATGCTGGTGTGATCTGTTCAGGACAAGGACTTCGGCTTGTGAATGAGTTTCATCTGTGCTCTGGGAGATTAGAAGTGATGTTTGGCAACACCTGGGGTTCAGTGTGTGACGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTGTGCAGACAGTTGGGCTGTGGGTCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGGCAAAGGGAAAGATCATGTTTGGTCAGAGGAGATTCAGTGTAGTGGAAATGAGTCTCAGATTCACACCTGTCCAAAGTCCTCAACACAGAAGCGAGGCTGTTCCCATGACAATGATGTTGGAGTGATCTGTTCTGGTTACACAGATCTCCGACTGGTCAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATTTCAGTGAATGGGGCACAGTGTgtgatgcatgctgggatatgagAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAAATCTCAGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGCTCTCATAGACGAGATGTTGGAGTCATCTGCTCTAGCCGTGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGAAAACATGACTGTAAACACAAGGAGGATGTAGGAGTCATCTGCTCTGaGTATAAAGAGATCAGGTTAACTGAAGGTTGTGAAGGGAATCTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGTTACAACAAGATGGACAGAGACACAGCAAGTCTGATCTGTCAAGAGCTGAACTGTGGAAGATCTGGCAGTGAACCCAGTAATTCAAAAGGACTAAAGTCTCATAATTGGCTCGATAAACTTAAATGTCGAAGATATGATTCCACGTTATGGCAGTGTCCATCTGCAGCCTGGGGACAGAATGACTGTGATAATGAAGTGGCTAAGATCACCTGCTCAGctcatgtTCCTCTCAGACTGCGTGGAGGGGACGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCGGACAGCTGGGGTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAAAGGGAATGAGCTTCACCTGTGGGACTGTCCTCTCTCCCTGAAGAAGCACACTAACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGACTTGCCGGATATATCAGTGTCCACTACTCCTGCCACATCAGCATCATCTTCTGCTGCAGTTTCTCAGACAGTGAGCTCAACATCAGTCTCTCCTCCACAAACTGGTCGAGAAAGTCTCCCAGTCCCCCCAGTGCTGCTGATTGTTCTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCGCTGCTTATAGTGATTAAGCAGAACAGAGTGATGAGGAGAGCTCTCTCTAAGAGGAGACACAGGACCACCACTGAGGCCGTTTATGAGGAGATtcagcacaaacacaaacactttacTCACAGGGAGAGTCTCATCTCTGAAGAACTGCATTCTGGGTATGAAGACGCTGATGATCTTCTCTCAGAAAAAGAGTTCAGaacagcatattatgatgatgtCACCAGCAACAGTGGCCTAAAAGAAGAGAAGATGAAGGAAAATACACTGGGATACTATGATGATGTCATCACTGATGGACTGAAGCCAGATTATGAGACAGAAAACACACCTGAGAGCTATGATGATGTCATGACCAGTGAACAGAGCTCTATTACGAAAGTGAACACAGCAGAGAGTTATGATGATGTCATCATTAATGGACAGAGGGAAACAGAGGGAGATCAGGAGGAATATGATGATGTGAGTGAAGATGTGACAAACCTGCTGGATTATGATGATGTGGACGAGGAGTTAAATGAAGAGGGAGAGACATTTGGGTCAACAATCAAACCCAGTTATTTGCTTCAACAGATTTGATCACTGAGAACTCAAGAGTGATATTGTAACTGATATCTCTGATATatcttttataataattttatgattattttatgataaaaaagttattaaagttatatatttgatgtgatttttttattcagctttgttCATTGCAATAAAAATCTTGTTTAGG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110915-1 Predicted to enable scavenger receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000096039 ENSDARG00000096153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055415 False 464 lncRNA 0.30 2 11124613 11125166
TCONS_00055416 False 551 lncRNA 0.36 5 11124613 11125650
TCONS_00055417 True 2898 mRNA 0.47 16 11124614 11132617

Neighbor

gene id symbol gene type direction distance location
XLOC_028567 si:dkey-21h14.10 coding downstream 1975 11112580 ~ 11122638 (-)
XLOC_028566 si:dkey-21h14.12 coding downstream 17757 11099041 ~ 11106856 (-)
XLOC_028565 si:dkey-21h14.12 coding downstream 26074 11084209 ~ 11098539 (-)
XLOC_028564 si:dkey-21h14.3 coding downstream 42652 11079058 ~ 11081961 (-)
XLOC_028563 si:dkey-21h14.12 coding downstream 46741 11070864 ~ 11077872 (-)
XLOC_028569 prmt8b coding upstream 11983 11144600 ~ 11165961 (-)
XLOC_028570 BX784029.2 coding upstream 46892 11179509 ~ 11186936 (-)
XLOC_028571 BX649349.2 coding upstream 112715 11245332 ~ 11248285 (-)
XLOC_028572 pimr173 coding upstream 268401 11401018 ~ 11404967 (-)
XLOC_028573 net1 coding upstream 440951 11573568 ~ 11603149 (-)
XLOC_028555 NA non-coding downstream 288993 10766014 ~ 10835620 (-)
XLOC_028556 NA non-coding downstream 338959 10771874 ~ 10785654 (-)
XLOC_028554 NA non-coding downstream 371672 10748977 ~ 10752941 (-)
XLOC_028553 BX897748.1 non-coding downstream 462936 10661561 ~ 10661677 (-)
XLOC_028551 NA non-coding downstream 776001 10346738 ~ 10348612 (-)
XLOC_028574 NA non-coding upstream 474141 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 non-coding upstream 475579 11608196 ~ 11608283 (-)
XLOC_028576 BX465862.4 non-coding upstream 478101 11610718 ~ 11692199 (-)

Expression


Co-expression Network