XLOC_002857 (pknox2)


Basic Information

Item Value
gene id XLOC_002857
gene name pknox2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31019607 ~ 31220558 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005290
TTTTGAGTTTAATGACAGCAGCTCCTGGTGGTAGGTCCTGGAATTGTTCCAGTAATAATGCtttgaaactgtattttgtaaCTATACATTATCTATATCTGAAGAAAAcgttatttttaacaaatattattgcATCATTCAAATATCATTTCAAACACTGATATATTGCCAAGATCCACATTTTACTCactctaaataatattttatgtcaCTGTTTTCTTTGCTTCAGGGTCTCCATGTGaagctatcccatgatgcaacaTGTGTCCCCAGCACCAGCATTGACCATGATGGCCACACAGAGCGTCCCTCCACCATCATACCAGGAGAGCCAACAGATGACAGGCACTACTCAGCAAAACTCAAAGGGCCAGCATGTGCACCTCTCTGCAGCGTCAGCAGGAGGAGCCGCTCCGGTCAGCGTGACTCTTGACCCTCAAGCCCAACTGGAGTCTGACAAACGAGCCGTTTACAGGCATCCTCTTTTTCCTCTTCTGGCGTTGCTGTTTGAGAAGTGTGAACAAGCCACGCAGGGCTCAGAATGCATCACATCCGCCAGCTTCGACGTCGACATCGAAAACTTTGTCCACCAGCAAGAGCAGGACCACAAGCCTTTCTTCAGCGAGGATCCTGAACTAGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGGATCCACCTGCTGGAGCTGGAGAAGGTGAACGAGCTCTGTAAAGACTTCTGCAACCGCTACATCACCTGCCTCAAGACCAAGATGCACAGTGACAATCTGCTCCGAAACGACCTGGGCGGCCCGTATTCTCCATCCCAGACCAGCCTCGGCCTGCAGCAGGACCTGCTTCAAAGCTCATCCCCATCGCTCACCTCCGTCTCCAGCACAGTGAACTCCTCCGGGATCGTAGTCCCAGCCGGTCCCCTGCAGCAGAACAACATCTCCATGACCACTATCAACTCTCAGGTGGTCTCAGGTGGGACGCTGTATCAGCCGGTGGCAATGGTTACCTCACAGGGGCAGGTGTTAACACAGGGGTTACCACAGGGAACCATCCAGATCCAAAACAATCAGGTGAATCTGGACTTGTCCTCACTCTTGGATGGCGATGACAAgaaatcaaaaaacaaaagagGCGTCCTTCCCAAACATGCCACAAACATTATGCGTTCCTGGCTCTTCCAGCATCTCATgCACCCTTATCCAACAGAAGATGAGAAAAGACAGATTGCAGCGCAAACAAACCTTACCTTATTACAGGTGAACAACTGGTTTATCAATGCCCGCAGGCGTATTCTGCAGCCCATGCTGGATGCCAGTAATCCTGACCCTGCTCCCAAAGCCAAGAAGATGAAATCTCAGCACAGACCCACACAGCGCTTCTGGCCCGATTCCATTGTAGCTGGAGTCCTGCAGACACACGGCACAAACAACTCAGACAACTCTCTTGGCATGGACGGCCTGCAGCCTCTGTCCTCAGACTCGGCTACGCTGGCCATGCAGCAGGCCATGCTGGGCGGAACCGACGACTCCATGGACGGCACAGAGGAggaggacgaggaggaggaggaagacgaGGGACTCGATGAGGACGACGACGAAGAGGACGACGAAGAACACGAGGCGAGCAGACAGATGATCAGGCGAGATCTGGGCCTCAATCACAATGAAGGACTCGAATAAAGAATGAAAAATAGCATAACTGACTTAACTCTTACTCATCACCATGCAAAACATCTCAACGCCGCACAAATGGCTCTCATTGGACACTAAGTGCCATGGAGCACCCAATCATAATGAAGGGGAGGGGCCTACCATTCTGGACTCCAAAATTGATGGAACATTGTATATTGGGCCGCTTTACGCAACCGGTCATGCTACTCTCATGCATATAATCCATTTAAGCCTTACTTTCTTTAAATATGTCTCTTTGGTTCTCAGGTGTCTTAGCATGACATTATGTCTACCCTCATATTTATAACCATGCAATGAGTGGATGTTTTaggcatgtttttttattattattattattagtttcatTTTTTGTAGAGTTAACAAAATATTCAGTCTTGgaagttaaacaaacagaaaaaaagaaacaatctaAATGCCTGACAGCACAATGTATGTACATTTGACAGTGATGCATTTTCCCCCCCTCAGAcgcttcatatttattttgtaatctGTCAGAAGGCTGTGGCACAATCAACAAAGGATGCCGTCCGCAAACGCATGTCGGGAGACTCAGAGTGCCAAGCATCTCTTCCATAGCGAGGAACAAAAAACTCTCTCCGAAATATGTTTGGACCTACAAATGACGTTTACTGAAGAACACTGCAGGAAAAACAAAAAGACATATTTACAGGTGCGTATCACACCCTGAAACGCCCCTGCTTTATTTTATGTGAAGGacgaaactaaacaaaaaaaaaaaaactgtgaagaTATTTCTGAGCTGTATCTACGGATCTACAGAATCACCTGTTTCTGATATGTGATGTTTAGAGAAGACAGAGGATGTTTCTGAATGTTATTACAGTTGGTCTTTGTGAAGTACATGTTTCTCATTATCCTTTTCTTggttgttgttcttttttttaaatggttcttCCAGAGCAAGTGATGATAGGGGagctttttaattatttgtttgtatacATTGTTGTCATAATCTATTGTGTTTCAGTAGACCATTTTGATAATTAAAAACGTTGaaactttaaaaacttaaaaactttaGTTGATCTCTTTGTCATTTTGAGACCTAATGAAGTGCTACTACAAATGAATACAAGCGAGGTAGTGGTAAACTGTGTTAGTGCTAAACTGGGGTCATTATCGATATGGTGCAGTATGTgggtttgacacccagtggctgAACTAGTTATTGCAATCTTGGATCAAACCAAGCGCtggcaggttgccagattgaggacaagAGCAAGTGATTTGAACTGTGTTctgaaataaaagcaacggcacccgatagaaggaatattttccatattaaaaaggagtttttgtcctaaccaaagcattgatatattagaaagggcttctatttctcacaggtgaacaaaagaaaactgacaatgatcacctcaggtaaacctcatgtgctttattcagtgttaaatgccaacaatgtgagtttgaatgtcattttttatgacatttattgccaaatACTCAAAGCAGAACACCTCAAATCTTGAAAAgaaaatactgtttaaaattgaactttaCAAATGAACAGATAGGAGTGATTcagaatgttcatttaaaaatgttaaatatgcattaattagattataaaccttacattTCGTGAgtaagtgcatattctgtgcttctgaatggctgtatttaaatttctgtcatgtttcgtctggccaacagccaaattgctcatcttGTCATGAAGCGTGTTGCTAGGACAcgcggttacaatgtaacctgctcatttaatgtttatgttcgtattatttatattatttgctaattaataacgtcatgtggaactctgaatctgcatctcatttcggagtttgctactgtccactggaagTCGCATTCCGGTCACAGATGCATGCTTTCAGAGCCCTtctgaatgaaagaatgaataaaatatgtggTTTTCCACCAAGTCAACctggagtgctgaaatataattggctaaactggca
>TCONS_00005291
GTCAGCCTGGTGTCAGTCTGATGAAGATTGGCATTCAGACTGTGTGGAGGGCAGCGCGCCGGCGGACAGACTCCAACATCAGATGCGCTGATGCTGAGAACAAGCAAACTGGTCTCCATGTGaagctatcccatgatgcaacaTGTGTCCCCAGCACCAGCATTGACCATGATGGCCACACAGAGCGTCCCTCCACCATCATACCAGGAGAGCCAACAGATGACAGGCACTACTCAGCAAAACTCAAAGGGCCAGCATGTGCACCTCTCTGCAGCGTCAGCAGGAGGAGCCGCTCCGGTCAGCGTGACTCTTGACCCTCAAGCCCAACTGGAGTCTGACAAACGAGCCGTTTACAGGCATCCTCTTTTTCCTCTTCTGGCGTTGCTGTTTGAGAAGTGTGAACAAGCCACGCAGGGCTCAGAATGCATCACATCCGCCAGCTTCGACGTCGACATCGAAAACTTTGTCCACCAGCAAGAGCAGGACCACAAGCCTTTCTTCAGCGAGGATCCTGAACTAGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGGATCCACCTGCTGGAGCTGGAGAAGGTGAACGAGCTCTGTAAAGACTTCTGCAACCGCTACATCACCTGCCTCAAGACCAAGATGCACAGTGACAATCTGCTCCGAAACGACCTGGGCGGCCCGTATTCTCCATCCCAGACCAGCCTCGGCCTGCAGCAGGACCTGCTTCAAAGCTCATCCCCATCGCTCACCTCCGTCTCCAGCACAGTGAACTCCTCCGGGATCGTAGTCCCAGCCGGTCCCCTGCAGCAGAACAACATCTCCATGACCACTATCAACTCTCAGGTGGTCTCAGGTGGGACGCTGTATCAGCCGGTGGCAATGGTTACCTCACAGGGGCAGGTGTTAACACAGGGGTTACCACAGGGAACCATCCAGATCCAAAACAATCAGGTGAATCTGGACTTGTCCTCACTCTTGGATGGCGATGACAAgaaatcaaaaaacaaaagagGCGTCCTTCCCAAACATGCCACAAACATTATGCGTTCCTGGCTCTTCCAGCATCTCATgCACCCTTATCCAACAGAAGATGAGAAAAGACAGATTGCAGCGCAAACAAACCTTACCTTATTACAGGTGAACAACTGGTTTATCAATGCCCGCAGGCGTATTCTGCAGCCCATGCTGGATGCCAGTAATCCTGACCCTGCTCCCAAAGCCAAGAAGATGAAATCTCAGCACAGACCCACACAGCGCTTCTGGCCCGATTCCATTGTAGCTGGAGTCCTGCAGACACACGGCACAAACAACTCAGACAACTCTCTTGGCATGGACGGCCTGCAGCCTCTGTCCTCAGACTCGGCTACGCTGGCCATGCAGCAGGCCATGCTGGGCGGAACCGACGACTCCATGGACGGCACAGAGGAggaggacgaggaggaggaggaagacgaGGGACTCGATGAGGACGACGACGAAGAGGACGACGAAGAACACGAGGCGAGCAGACAGATGATCAGGCGAGATCTGGGCCTCAATCACAATGAAGGACTCGAATAAAGAATGAAAAATAGCATAACTGACTTAACTCTTACTCATCACCATGCAAAACATCTCAACGCCGCACAAATGGCTCTCATTGGACACTAAGTGCCATGGAGCACCCAATCATAATGAAGGGGAGGGGCCTACCATTCTGGACTCCAAAATTGATGGAACATTGTATATTGGGCCGCTTTACGCAACCGGTCATGCTACTCTCATGCATATAATCCATTTAAGCCTTACTTTCTTTAAATATGTCTCTTTGGTTCTCAGGTGTCTTAGCATGACATTATGTCTACCCTCATATTTATAACCATGCAATGAGTGGATGTTTTaggcatgtttttttattattattattattagtttcatTTTTTGTAGAGTTAACAAAATATTCAGTCTTGgaagttaaacaaacagaaaaaaagaaacaatctaAATGCCTGACAGCACAATGTATGTACATTTGACAGTGATGCATTTTCCCCCCCTCAGAcgcttcatatttattttgtaatctGTCAGAAGGCTGTGGCACAATCAACAAAGGATGCCGTCCGCAAACGCATGTCGGGAGACTCAGAGTGCCAAGCATCTCTTCCATAGCGAGGAACAAAAAACTCTCTCCGAAATATGTTTGGACCTACAAATGACGTTTACTGAAGAACACTGCAGGAAAAACAAAAAGACATATTTACAGGTGCGTATCACACCCTGAAACGCCCCTGCTTTATTTTATGTGAAGGacgaaactaaacaaaaaaaaaaaaactgtgaagaTATTTCTGAGCTGTATCTACGGATCTACAGAATCACCTGTTTCTGATATGTGATGTTTAGAGAAGACAGAGGATGTTTCTGAATGTTATTACAGTTGGTCTTTGTGAAGTACATGTTTCTCATTATCCTTTTCTTggttgttgttcttttttttaaatggttcttCCAGAGCAAGTGATGATAGGGGagctttttaattatttgtttgtatacATTGTTGTCATAATCTATTGTGTTTCAGTAGACCATTTTGATAATTAAAAACGTTGaaactttaaaaacttaaaaa
>TCONS_00005292
GGCAGCGCGCCGGCGGACAGACTCCAACATCAGATGCGCTGATGCTGAGAACAAGCAAACTGGTCTCCATGTGaagctatcccatgatgcaacaTGTGTCCCCAGCACCAGCATTGACCATGATGGCCACACAGAGCGTCCCTCCACCATCATACCAGGAGAGCCAACAGATGACAGGCACTACTCAGCAAAACTCAAAGGGCCAGCATGTGCACCTCTCTGCAGCGTCAGCAGGAGGAGCCGCTCCGGTCAGCGTGACTCTTGACCCTCAAGCCCAACTGGAGTCTGACAAACGAGCCGTTTACAGGCATCCTCTTTTTCCTCTTCTGGCGTTGCTGTTTGAGAAGTGTGAACAAGCCACGCAGGGCTCAGAATGCATCACATCCGCCAGCTTCGACGTCGACATCGAAAACTTTGTCCACCAGCAAGAGCAGGACCACAAGCCTTTCTTCAGCGAGGATCCTGAACTAGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGGATCCACCTGCTGGAGCTGGAGAAGGTGAACGAGCTCTGTAAAGACTTCTGCAACCGCTACATCACCTGCCTCAAGACCAAGATGCACAGTGACAATCTGCTCCGAAACGACCTGGGCGGCCCGTATTCTCCATCCCAGACCAGCCTCGGCCTGCAGCAGGACCTGCTTCAAAGCTCATCCCCATCGCTCACCTCCGTCTCCAGCACAGTGAACTCCTCCGGGATCGTAGTCCCAGCCGGTCCCCTGCAGCAGAACAACATCTCCATGACCACTATCAACTCTCAGGTGGTCTCAGGTGGGACGCTGTATCAGCCGGTGGCAATGGTTACCTCACAGGGGCAGGTGTTAACACAGGGGTTACCACAGGGAACCATCCAGATCCAAAACAATCAGGTGAATCTGGACTTGTCCTCACTCTTGGATGGCGATGACAAgaaatcaaaaaacaaaagagGCGTCCTTCCCAAACATGCCACAAACATTATGCGTTCCTGGCTCTTCCAGCATCTCATgCACCCTTATCCAACAGAAGATGAGAAAAGACAGATTGCAGCGCAAACAAACCTTACCTTATTACAGGTGAACAACTGGTTTATCAATGCCCGCAGGCGTATTCTGCAGCCCATGCTGGATGCCAGTAATCCTGACCCTGCTCCCAAAGCCAAGAAGATGAAATCTCAGCACAGACCCACACAGCGCTTCTGGCCCGATTCCATTGTAGCTGGAGTCCTGCAGACACACGGCACAAACAACTCAGACAACTCTCTTGGCATGGACGGCCTGCAGCCTCTGTCCTCAGACTCGGCTACGCTGGCCATGCAGCAGGCCATGCTGGGCGGAACCGACGACTCCATGGACGGCACAGAGGAggaggacgaggaggaggaggaagacgaGGGACTCGATGAGGACGACGACGAAGAGGACGACGAAGAACACGAGGCGAGCAGACAGATGATCAGGCGAGATCTGGGCCTCAATCACAATGAAGGACTCGAATAAAGAATGAAAAATAGCATAACTGACTTAACTCTTACTCATCACCATGCAAAACATCTCAACGCCGCACAAATGGCTCTCATTGGACACTAAGTGCCATGGAGCACCCAATCATAATGAAGGGGAGGGGCCTACCATTCTGGACTCCAAAATTGATGGAACATTGTATATTGGGCCGCTTTACGCAACCGGTCATGCTACTCTCATGCATATAATCCATTTAAGCCTTACTTTCTTTAAATATGTCTCTTTGGTTCTCAGGTGTCTTAGCATGACATTATGTCTACCCTCATATTTATAACCATGCAATGAGTGGATGTTTTaggcatgtttttttattattattattattagtttcatTTTTTGTAGAGTTAACAAAATATTCAGTCTTGgaagttaaacaaacagaaaaaaagaaacaatctaAATGCCTGACAGCACAATGTATGTACATTTGACAGTGATGCATTTTCCCCCCCTCAGAcgcttcatatttattttgtaatctGTCAGAAGGCTGTGGCACAATCAACAAAGGATGCCGTCCGCAAACGCATGTCGGGAGACTCAGAGTGCCAAGCATCTCTTCCATAGCGAGGAACAAAAAACTCTCTCCGAAATATGTTTGGACCTACAAATGACGTTTACTGAAGAACACTGCAGGAAAAACAAAAAGACATATTTACAGGTGCGTATCACACCCTGAAACGCCCCTGCTTTATTTTATGTGAAGGacgaaactaaacaaaaaaaaaaaaactgtgaagaTATTTCTGAGCTGTATCTACGGATCTACAGAATCACCTGTTTCTGATATGTGATGTTTAGAGAAGACAGAGGATGTTTCTGAATGTTATTACAGTTGGTCTTTGTGAAGTACATGTTTCTCATTATCCTTTTCTTggttgttgttcttttttttaaatggttcttCCAGAGCAAGTGATGATAGGGGagctttttaattatttgtttgtatacATTGTTGTCATAATCTATTGTGTTTCAGTAGACCATTTTGATAATTAAAAACGTTGaaacttt
>TCONS_00005293
GGTCTCCATGTGaagctatcccatgatgcaacaTGTGTCCCCAGCACCAGCATTGACCATGATGGCCACACAGAGCGTCCCTCCACCATCATACCAGGAGAGCCAACAGATGACAGGCACTACTCAGCAAAACTCAAAGGGCCAGCATGTGCACCTCTCTGCAGCGTCAGCAGGAGGAGCCGCTCCGGTCAGCGTGACTCTTGACCCTCAAGCCCAACTGGAGTCTGACAAACGAGCCGTTTACAGGCCATGCTGGGCGGAACCGACGACTCCATGGACGGCACAGAGGAggaggacgaggaggaggaggaagacgaGGGACTCGATGAGGACGACGACGAAGAGGACGACGAAGAACACGAGGCGAGCAGACAGATGATCAGGCGAGATCTGGGCCTCAATCACAATGAAGGACTCGAATAAAGAATGAAAAATAGCATAACTGACTTAACTCTTACTCATCACCATGCAAAACATCTCAACGCCGCACAAATGGCTCTCATTGGACACTAAGTGCCATGGAGCACCCAATCATAATGAAGGGGAGGGGCCTACCATTCTGGACTCCAAAATTGATGGAACATTGTATATTGGGCCGCTTTACGCAACCGGTCATGCTACTCTCATGCATATAATCCATTTAAGCCTTACTTTCTTTAAATATGTCTCTTTGGTTCTCA

Function

symbol description
pknox2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human PKNOX2 (PBX/knotted 1 homeobox 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-112 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human PKNOX2 (PBX/knotted 1 homeobox 2).

Ensembl:

ensembl_id ENSDARG00000055349

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005290 False 3682 mRNA 0.43 10 31019607 31104983
TCONS_00005291 False 2611 mRNA 0.47 12 31020559 31220558
TCONS_00005292 False 2549 mRNA 0.47 11 31020572 31175744
TCONS_00005293 True 680 processed_transcript 0.51 3 31021356 31104754

Neighbor

gene id symbol gene type direction distance location
XLOC_002856 panx3 coding downstream 2801 30997238 ~ 31016806 (-)
XLOC_002855 opcml coding downstream 234106 30617826 ~ 30785501 (-)
XLOC_002854 CT737197.1 coding downstream 488350 30531143 ~ 30531257 (-)
XLOC_002853 lim2.1 coding downstream 1116442 29896275 ~ 29903165 (-)
XLOC_002852 bsx coding downstream 1127121 29890535 ~ 29892486 (-)
XLOC_002858 NA coding upstream 42294 31262852 ~ 31295006 (-)
XLOC_002859 robo3 coding upstream 78414 31298972 ~ 31563049 (-)
XLOC_002860 fez1 coding upstream 517943 31738501 ~ 31782616 (-)
XLOC_002861 vps26bl coding upstream 579654 31800212 ~ 31805923 (-)
XLOC_002862 NA coding upstream 857253 32077811 ~ 32084624 (-)
XLOC_002845 CU861448.1 non-coding downstream 1311425 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 1528520 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 1881603 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 2095974 28923517 ~ 28923633 (-)
XLOC_002863 NA non-coding upstream 995855 32216413 ~ 32250846 (-)
XLOC_002867 NA non-coding upstream 1364127 32584685 ~ 32591462 (-)
XLOC_002870 NA non-coding upstream 1456252 32676810 ~ 32678245 (-)

Expression


Co-expression Network