G940493


Basic Information

Item Value
gene id G940493
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 8931871 ~ 8976279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1072669
TGCATATATTCACCAAATCCTGCACTGAAACATGGTTATATTAATAGTATTGCACTTGCAGCCTTATTTTGTCCAGCTAATAGACTCACCACCAATGGATCAACATTACAGAGGAAACGTTCAAAtccttttgctgcaggattatttcacTGCAACAATACTGGctaaattaagatcttacatctgtacatCTACAGTATGTGTATAATTTGTAATATTAGACAATGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1072669 True 230 lncRNA 0.35 2 8931871 8976279

Neighbor

gene id symbol gene type direction distance location
LOC118937299 NA coding upstream 6130 8921240 ~ 8925741 (+)
LOC100135908 LOC100135908 coding upstream 51157 8869576 ~ 8880714 (+)
LOC110535221 LOC106579618 coding upstream 71653 8857106 ~ 8860218 (+)
LOC118937463 NA coding upstream 76395 8845565 ~ 8855476 (+)
LOC110535219 NA coding upstream 129614 8799540 ~ 8802257 (+)
LOC110535237 LOC106579624 coding downstream 302646 9278925 ~ 9296959 (+)
LOC118937475 NA coding downstream 314448 9290727 ~ 9290864 (+)
LOC100305285 pdcd6 coding downstream 342753 9319032 ~ 9329583 (+)
LOC110535239 LOC106579629 coding downstream 380750 9357029 ~ 9405871 (+)
LOC118937311 LOC106579630 coding downstream 434599 9410878 ~ 9412277 (+)
G940461 NA non-coding upstream 94037 8837611 ~ 8837834 (+)
G940437 NA non-coding upstream 128316 8803230 ~ 8803555 (+)
G940380 NA non-coding upstream 142958 8788498 ~ 8788913 (+)
G940379 LOC100136486 non-coding upstream 188747 8710911 ~ 8743124 (+)
G940520 NA non-coding downstream 53275 9029554 ~ 9106845 (+)
G940515 NA non-coding downstream 70505 9046784 ~ 9242084 (+)
G940526 NA non-coding downstream 72326 9048605 ~ 9073783 (+)
G940527 NA non-coding downstream 72586 9048865 ~ 9100838 (+)
G940529 NA non-coding downstream 86412 9062691 ~ 9198442 (+)
G940376 NA other upstream 279350 8651504 ~ 8652993 (+)
G940313 NA other upstream 391004 8532540 ~ 8540867 (+)
G940247 NA other upstream 492096 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 550291 8379847 ~ 8497020 (+)
G941893 NA other downstream 1268830 10245109 ~ 10245506 (+)
G942702 NA other downstream 2134447 11110726 ~ 11111336 (+)
G944957 NA other downstream 4411271 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 5088269 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 5179075 14154784 ~ 14202999 (+)

Expression


Co-expression Network