G940515


Basic Information

Item Value
gene id G940515
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9046784 ~ 9242084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1072698
GGTCACAATATTGAGGATAGTTTAgtgagatctgacctgccccatgagcccactcagacactcttgacacACAATCCAAATTGGAAATACCAATGTGACTCATGCTCACAGTGCAATAGCATTACAAAAACATCCttcttcagacacccacatacaggtGGAAACATCCCTGTTAGGGGTATCATCTCTTGCAAGATAAAGGGAGTAATCTGTCTCATCACATGTTCATGTGGAAAAGCCTACGTAGGACAACCgaaaagacaattaaaacaatGCATAGCTGACCACTGTAACGTGTGTCGTCGTCTGATGAGGAGGAatcggaccaaagtgcagcgtggtaagagttcatgacctttatttaactgaacACTGACACAAAAAGACCAAAGTGCAaactgaaacagtcctgtcaggtgcagaaaacactaaacagaaaacaactacccacaaaacataggtgggaaaaagctacctaagtatggttcccaatcagagacaacgatagtcagctgtccctgattgagaaccatacccggccaaaacaaagaaatacaaaacatagagaaaggaacatagaatgcccacccaaatcacaccctgacaaaaccaaaatagagacataaaaagctctctaaggtcagtgcGTGACAACCACAgcagctcaatcaggtgtaataacactgactatccagtagcagctcactttgttgaagctaaccatcccATCTCCTCACTCAAAaacacacgcatatac
>TU1072696
AgtatattctattacagacaccttaatgcagacttttaaattatattttgtgACCTGCAACACTTCCTTCAGTAGAGAGACCCTACCGTTTCTCCAGCCAATGATTGCATCTTGTAACTCATTAAAATGGTATTATCCAATAGCTGCTTCATCTTTGAGTCAGAGTTTTTCCTTTTTCCTATTTTCCTTTGCCCCCAACTATGAGAAAATGTATGTGGAACAATTTGAGGAACCACTCACAAAACAGAGACACCCCCTACTTTCTAAAATCCCCCTATGGAAGAGATACATAGACGATGGCTTTTTGCTCTGGGAAGGAAGTCAGCAGGAACAAAATTAATTCCAAACTCTGCTAAACGAGGGCTCTGAATATCTTAAATTCACCATGCAGACTGATTAGAGAAAAATAACTACCTGGACTTATGGATCATCAACGAGAATGATGCATAACATACAGACTTGTACACAAAGTCAACAGACCTCAATACCCTGCTACGTGgggatagtatgcatccccttcccctcaggaatggtctaccatacagccagttatgcagggttaaacaaATCTGTGGCCAACAGTCAGATTTTGACAGCAATGCTaagaaaatgaaaaataaatttAAATTCTGAGGCTACATGGAAAAAATGATTGATGCTGCAACAATGAAAATATCTCAAAAACCACGAGAAGAATTGCTAAAAACTAAACCAAAGAATAAAAACAAATCTTTTGCACTAAGTACACCAAGTGTTCagagaaaatgaaagcaatcctgAAGAAGCACTGGCATATTCTGCAGTCAGACTATAGAATGATAAACCTCTTCAAGGACCAACCCACTGGTGGTCTATAAGCATGGTCACATTATTGTGGATAGCTTAgtgagatctgacctgccccctgagcccactcagacagTCTTGACACACAATCCAAATTGGAAATACCAATGTGGCTCATGCTCACAGTGCAATAGCACTACAAAAACATCAttcttcagacacccacatacaggtGGAAACATCCCTGTTAGGGGTATCATCTCTTGCAAGATAAAGGGAGTAATCTGTCTCATCACATGTTCATGTGGAAAAGCCTACGTAGGACAACCgaaaagacaattaaaacaatGCATAGCTGACCACTGTAACGTGTGTCGTCGTCTGATGAGGAGGAatcggaccaaagtgcagcgtggtaagagttcatgacctttatttaactgaacACTGACACAAAAAGACCAAAGTGCAaactgaaacagtcctgtcaggtgcagaaaacactaaacagaaaacaactacccacaaaacataggtgggaaaaagctacctaagtatggttcccaatcagagacaatgatagtcagccaaaacaaagaaatacaaaacatagagaaaggaacatagaatgcccacccaaatcacaccctgacaaaaccaaaatagagacataaaaagctctctaaggtcagtgcGTGACAACCACCgcagctcaatcaggtgtaaTAACCCTGACTatccagtagcagctcactttgttgaagctaaccatcccATCTCCTCACTCAAAaacacacgcatatacacacacattgagCATGTTGGCCGACCAAGGAGAGGAGGTATTTAAAAACATTTACCCCTACTGTCTtaatattgactttga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1072698 False 757 lncRNA 0.43 3 9046784 9090727
TU1072696 True 1672 lncRNA 0.40 5 9060216 9242084

Neighbor

gene id symbol gene type direction distance location
LOC118937300 NA coding upstream 70380 8972920 ~ 8976404 (+)
LOC110535229 LOC106579621 coding upstream 78299 8938355 ~ 8968485 (+)
LOC110535228 LOC106579619 coding upstream 113498 8889740 ~ 8933322 (+)
LOC118937299 NA coding upstream 121043 8921240 ~ 8925741 (+)
LOC100135908 LOC100135908 coding upstream 166070 8869576 ~ 8880714 (+)
LOC110535237 LOC106579624 coding downstream 36841 9278925 ~ 9296959 (+)
LOC118937475 NA coding downstream 48643 9290727 ~ 9290864 (+)
LOC100305285 pdcd6 coding downstream 76948 9319032 ~ 9329583 (+)
LOC110535239 LOC106579629 coding downstream 114945 9357029 ~ 9405871 (+)
LOC118937311 LOC106579630 coding downstream 168794 9410878 ~ 9412277 (+)
G940493 NA non-coding upstream 70505 8931871 ~ 8976279 (+)
G940461 NA non-coding upstream 208950 8837611 ~ 8837834 (+)
G940437 NA non-coding upstream 243229 8803230 ~ 8803555 (+)
LOC110535219 NA non-coding upstream 244549 8799540 ~ 8802257 (+)
G940573 NA non-coding downstream 18914 9260998 ~ 9261292 (+)
G940574 NA non-coding downstream 20665 9262749 ~ 9264652 (+)
G940579 NA non-coding downstream 28559 9270643 ~ 9271014 (+)
G940586 NA non-coding downstream 38845 9280929 ~ 9281140 (+)
G940576 NA non-coding downstream 55023 9297107 ~ 9342601 (+)
LOC118937463 NA other upstream 191347 8845565 ~ 8855476 (+)
G940376 NA other upstream 394263 8651504 ~ 8652993 (+)
G940313 NA other upstream 505917 8532540 ~ 8540867 (+)
G940247 NA other upstream 607009 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 665204 8379847 ~ 8497020 (+)
G941893 NA other downstream 1003025 10245109 ~ 10245506 (+)
G942702 NA other downstream 1868642 11110726 ~ 11111336 (+)
G944957 NA other downstream 4145466 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4822464 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4913270 14154784 ~ 14202999 (+)

Expression


Co-expression Network