XLOC_028572 (pimr173)


Basic Information

Item Value
gene id XLOC_028572
gene name pimr173
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11401018 ~ 11404967 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055423
gacATCATTTTAAGGCATTACAAAATTGGTGACAAGCTGGGCAAAGGTGGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATGGACTTAAGGTTGCTGTGAAATGTACTGTAAAGTCATCGAAGATGAAGGAAATCACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATTATCAAACTCCTAGACTGGGAGGACAACGATGACCACTACGTTATAATCATGGAGCGACCCATACCTTGTATGGACTTGTTTTGCTTCTTAAACCACAACAACGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTCATGCTGTGAGCGTTTGCTTTAATCGCGGTGTCTTCCATCGGGATATAAAACTTGAAAACCTCCTGGTGAATCCAGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGCAAAGGAATCAGGCTACAAAGTCTTCTGTGgCACAAGAGAATACTTCCCTCCGGAGTACGAATTGTATGGCAGGTACCATGCACAGCCGGCGACTGTTTGGTCTCTAGGGATCGTCCTGTTCGCAATGATGTGTTGGGCTTTACCCACTGTCTCCGACCACTCCTTGATAAGGGACTATCTTTGGACTAGAACTGACCTGTCAAAAGGTCATGGAGTAAGACAGGAGAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGctctttgtattgtattgttgcCTTGTCAACTTCTGTAATAATGCAGGGCAACTTACATATGAGTGCCTTTGTTGATTAATTAATATGTCATGAATGTTTTGAATGTattgtcattatattattattatacacgtATGCAAATGCACTATATATGTCATGTGTGTGTCTTATATACTGGTGAATTATTAAAGGATTATAAAATCAA
>TCONS_00055424
AAAAAGGGCTTCTGGAAGTGGCCAGACTTCCTTTGCAAGACTAGAACATACGACCTCGTCCAGGCCACGAAGGAATACCATGAAGCCCTGttaaaacaaaaagttttttgTCAGCCCATTGAAACACCCATTGGGCCTAATGAGGTTCCTGAAgcgaaaaaggaaaaaaagggcTTCTGGAAGAGAGTCACTTGTCTCTTCACTTCGAAGTCTAGTAGAGGTTGCTGTGAAATGTACTGTAAAGTCATCGAAGATGAAGGAAATCACAGTGAATGCTGCCAGATGATCTGCGGttgtctgcagccagacccagATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAGAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGctctttgtattgtattgttgcCTTGTCAACTTCTGTAATAATGCAGGGCAACTTACATATGAGTGCCTTTGTTGATTAATTAATATGTCATGAATGTTTTGA
>TCONS_00055425
GGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATGGACTTAAGGTTGCTGTGAAATGTACTGTAAAGTCATCGAAGATGAAGGAAATCACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATTATCAAACTCCTAGACTGGGAGGACAACGATGACCACTACGTTATAATCATGGAGCGACCCATACCTTGTATGGACTTGTTTTGCTTCTTAAACCACAACAACGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTCATGCTGTGAGCGTTTGCTTTAATCGCGGTGTCTTCCATCGGGATATAAAACTTGAAAACCTCCTGGTGAATCCAGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGCAAAGGAATCAGGCTACAAAGTCTTCTGTGgCACAAGAGAATACTTCCCTCCGGAGTACGAATTGTATGGCAGGTACCATGCACAGCCGGCGACTGTTTGGTCTCTAGGGATCGTCCTGTTCGCAATGATGTGTTGGGCTTTACCCACTGTCTCCGACCACTCCTTGATAAGGGACTATCTTTGGACTAGAACTGACCTGTCAAAAGAATGCTGCCAGATGATCTGCGGttgtctgcagccagacccagATGAGAGACTCGCTCTGCAGGAGATGCATCTCCATAACTGGTTTAAGGTCATGGAGTAAGACAGGAGAAACAACTCAGCAACCCTAGCACACCTGAGGACTGCTGCATTGGATTGctctttgtattgtattgttgcCTTGTCAACTTCTGTAATAATGCAGGGCAACTTACATATGAGTGCCTTTGTTGATTAATTAATATGTCATGAATGTTT
>TCONS_00055426
tATTACAGCTTCTGCTTTAGAGGACCATGTCCCTGCTGCTGAGCAGCTAGAGGAGGACGACACAGAAGATGacATCATTTTAAGGCATTACAAAATTGGTGACAAGCTGGGCAAAGGTGGATTCGGCTCTGTCTACAAAGCCACACGCCGCAGGGATGGACTTAAGGTTGCTGTGAAATGTACTGTAAAGTCATCGAAGATGAAGGAAATCACAGTGCCTGGTTATGACAAACCCCTCCCTACAGAAATTGCCCTGACAATCATGGCCAACAATGGTCCCTACGTCCCCGAGATTATCAAACTCCTAGACTGGGAGGACAACGATGACCACTACGTTATAATCATGGAGCGACCCATACCTTGTATGGACTTGTTTTGCTTCTTAAACCACAACAACGGACCTCTTGATGAGAAGACGGGACGCCATATAATGCGGCAGGCCATTCATGCTGTGAGCGTTTGCTTTAATCGCGGTGTCTTCCATCGGGATATAAAACTTGAAAACCTCCTGGTGAATCCAGACACTTTGGAGGTAAAGCTAATAGACTTCGGCTGTGGTGCGATCGCAAAGGAATCAGGCTACAAAGTCTTCTGTGGTAAGTGTTATGAACTTTGTTGTCATAAAAA

Function

symbol description
pimr173 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-89 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000070015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055423 False 976 mRNA 0.44 5 11401018 11403859
TCONS_00055424 False 530 mRNA 0.44 4 11401121 11404967
TCONS_00055425 False 911 mRNA 0.47 6 11401124 11403811
TCONS_00055426 True 627 lncRNA 0.46 4 11402691 11404177

Neighbor

gene id symbol gene type direction distance location
XLOC_028571 BX649349.2 coding downstream 152733 11245332 ~ 11248285 (-)
XLOC_028570 BX784029.2 coding downstream 214082 11179509 ~ 11186936 (-)
XLOC_028569 prmt8b coding downstream 235057 11144600 ~ 11165961 (-)
XLOC_028568 BX784029.1 coding downstream 268401 11124613 ~ 11132617 (-)
XLOC_028567 si:dkey-21h14.10 coding downstream 278380 11112580 ~ 11122638 (-)
XLOC_028573 net1 coding upstream 168601 11573568 ~ 11603149 (-)
XLOC_028574 NA coding upstream 201791 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 coding upstream 203229 11608196 ~ 11608283 (-)
XLOC_028576 BX465862.4 coding upstream 205751 11610718 ~ 11692199 (-)
XLOC_028577 podxl coding upstream 327189 11732156 ~ 11751037 (-)
XLOC_028555 NA non-coding downstream 565398 10766014 ~ 10835620 (-)
XLOC_028556 NA non-coding downstream 615364 10771874 ~ 10785654 (-)
XLOC_028578 NA non-coding upstream 348663 11753630 ~ 11754856 (-)
XLOC_028579 NA non-coding upstream 350029 11754996 ~ 11758042 (-)

Expression


Co-expression Network