XLOC_028573 (net1)


Basic Information

Item Value
gene id XLOC_028573
gene name net1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11573568 ~ 11603149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055427
GATTgttagagcacacacacacacacacagtgtgtttAGAAGTTAGGAAGCTCCGCTCAGGCGGACAATCACGAGTTGGGGGGACGTTGATGTTTTCAGTCCCGTTATGTTACATCACGCTTTTATTTAAGAACTACTTGTGGATTACTGTCAACCCTTGGAAATAACAGAAACCAGTCAGTGGATTTTACTGAAAGAAATGGTGGCTTACGATGAACCTTGTGTGGTACCTATCAAACGGACTTTACAAAAGATAGACTACCAGAACCAGGCGTACAAAGAACTAGAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGCCTCATTCCGGGGTGACGGGCGGTCTCCGGGCGTGCCCCAGCAGAAGCCATGCAGTAAGGCTGCAGCTCCCACACCACCGAAGCGCCGGAACAGCACGCTCTGGTCAGAGACCCTAGACGTCCACCAGAAAGGAACGTTTTCCACCAAAGAGATTAAGAGACAAGAGGCAATTTTTGAGTTGTCTCGAGGGGAACAGGACCTGATTGAAGACCTGAAGTTAGCCCGAAAGGCATACCATGACCCAATGCTGAAACTTTCTATTATGTCTGAAGAGGAGTTAACAGCCATCTTTGGAGATTTGGATGCTTACATTCCCCTTCATGAAGATCTTCTTGATCAATTGGCAAAGGCCACAGGTACGGATGGCACAGTGAGACAGATCGGCAAGATTGTTGTTGACTGGCTGCCAAGGTTAAATGCATACAGAGCATACTGTAGCAACCAACTAGCTGCCAAAGCCCTCCTCGATCAGAAGAAACAGGACCCAAGAGTTCAAGACTTCCTGCAGCGCTGCCTTGAGTCACCTTTCAGCAGGAAACTAGACTTATGGAGCTTCCTGGACATCCCTCGCTCACGTTTGGTCAAATACCCTCTTCTTCTGAAAGAGATTTTAAGACACACACCACCAGATCACCCAGACAAAGGAAGTCTTGAGCAAGCGATAAGTGTCATTCAAGCAGTGCTGGCTGACATAAACATGAAGAAAGGGGAGTCAGAATGTCAATACTATATCGATAAGCTGGAATATTTGGAAGACAAGCAGAAAGACCCACGCATTGAGCAGTGCAAGAGCTTGCTTTGCCATGGGGAACTTCGCAACAAAAGTGGCACGAAACTGCACGTATTTCTGTTCACCGAGGTTCTGATTCTGACTCGACCTGTGACGCGGAATGACCGCCATTGCTTCCAGGTGTACCGTCAGCCAATCCCAGTCCAGGATCTTGTATTGGAAGACCTGCAGGATGGAGACGTCCGCATGGGAGGATCATTCAGAGGAGCCTTTAGTAACGCTGATAAAGCCAAAAACATTTTCCGGGTGCGCTTCCAGGACGCATCTCAGGGACAGTCGCACACACTGCAGGTCAACGACGTCTTCCACAAGCAACAGTGGCTCAACTGCCTCCGCAATGCCATGTCCACCCAGAAGGATTTGACACTCTCTGAGAATGAGCCCTTGACCACCCCAGCCACCGACGTTTGCGCCAAACGGCGCTCTTCTTCTGTCTCCACTGTCATCCAAATGGATGAAATGGATGAGAACTGTCCACGGGCTGCAGCCTCCGCCCCTTCCTCCCCTAGCTCTGAGGAGCCCCCCAGTCCTACACCCTCCGCCACCTCCACCCTCTCCTCATCCTCATCATCGTCTTCAATATCCGCCCCCATCCCCTCCCGCAAATCCAAAAAGGACAAGCGTTCGCTCTGCCCGTTGGGCAAGAGGAAGGAGACCATGGTGTAGATGGAGTGGCACCATGCGGAGGacttgtatttatgtgtgtgtgtatggttttTACAGCAGTGTTTCTGTTACTGTCCACAATGGCAGCTATTACTACCAAATCCCTCCCCCCAGCAAACCCTCCTTGGTCCACATGGGCCGCACCAGTACCAGAAAGACAGTATTTGTGAGGCGACTGTGTGGATCTCAAGGGATTGAAGATTGAAGACGCATCCCAATCactatgaaacactttgatttgTGTGAAAGCGCAAGATCACACAacttgtcttgtttactgttagtttggtcgttttattttattaataatgatttttctttttgtaattaaagtttatctttttttaaacttCTCAATAAGATATTTACTGtagctctttttgttttttaataaaagcacTGTGTTTAGCTTTTAGAAGGGAATACCACCCACTGAGAGGGGAAAAAGACCTCCAAAGCAATGAAAATTACTTTGTACTGAGTCTGAACCAAAGCTCTACTGGAAGGCAAGTCTTACAAGTACATTcccattaaacaatattttatcagctccattttatatttaaatcagaaggtatagttttttttttcaaaacaaatgctATGTCAGTAGCAATATGATTTATACATTTCCAATTGGAAAATTTGCTCTTTTGTTTATACAAAAACCCCAAAATCTGAGCCATATTTGTTTTCCACCCCCTTAAAATGATGGATGACTTTCAATGTAGCATCTTGCATGGAGCTTTACTTGTTGAGTCCTGCCTGTATTATCATGAGGGCCCAGTGCATGTACATGCCTGTCGAAGCAGAAAGTTGATGTAAAGTGGACTGTCGTGTAAAAAGTTGAATGAGGGCTAGAGAAATGTCGAGTTGAGATTTAGAAGGAAGCTTTGGAATAGAGTTGGAAATGACTAGATGGACTTGATGATTGACGCTACTTGATATTAGCAAGCATCCATGGATTTTTGGTTTGCTGTTATTTGTCATTTCGTAGTGTCTTCATGAAGTAGGAACGTTTGAAACACTGGTGTAAAGCCAGGGTGTTGTTTTGAGAAGGAAGATGAAAAGTATGTTTAGGAGAATGAACTGTTAAAGAAGGTTAAAGTATGTTATGaccacttcaaaaaaaaaaaaaaaaaatgtctgtaaaagTGTGTAACCGAAAGGAATAGATGTAAATTATTCAGAAGGACTGCTGTggactgtatgtacagtatgtggtgTAAAAATCAactattaaatgaacaataaaggTCTGTG
>TCONS_00055428
GTTTGTTGGAGAGATCAGGGCTGAGTGACGCTTTCTCTGTATCGGTTCTGCAGACCATGATGCAGTGTCACAGGAGACAGAGCTACACCAGGCTTGGTGTGTGGCCATCTTTGAGACGAGGAAGCTCTTTTACCTTTCTGACACCTGGACCTCAGTGGGACTTCACACTGAAACGCAAGCGCAGGGAAAAGGATGATGCCGATGCAGTCAGTTTGTGCAGCTTTGACTTCAAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGCCTCATTCCGGGGTGACGGGCGGTCTCCGGGCGTGCCCCAGCAGAAGCCATGCAGTAAGGCTGCAGCTCCCACACCACCGAAGCGCCGGAACAGCACGCTCTGGTCAGAGACCCTAGACGTCCACCAGAAAGGAACGTTTTCCACCAAAGAGATTAAGAGACAAGAGGCAATTTTTGAGTTGTCTCGAGGGGAACAGGACCTGATTGAAGACCTGAAGTTAGCCCGAAAGGCATACCATGACCCAATGCTGAAACTTTCTATTATGTCTGAAGAGGAGTTAACAGCCATCTTTGGAGATTTGGATGCTTACATTCCCCTTCATGAAGATCTTCTTGATCAATTGGCAAAGGCCACAGGTACGGATGGCACAGTGAGACAGATCGGCAAGATTGTTGTTGACTGGCTGCCAAGGTTAAATGCATACAGAGCATACTGTAGCAACCAACTAGCTGCCAAAGCCCTCCTCGATCAGAAGAAACAGGACCCAAGAGTTCAAGACTTCCTGCAGCGCTGCCTTGAGTCACCTTTCAGCAGGAAACTAGACTTATGGAGCTTCCTGGACATCCCTCGCTCACGTTTGGTCAAATACCCTCTTCTTCTGAAAGAGATTTTAAGACACACACCACCAGATCACCCAGACAAAGGAAGTCTTGAGCAAGCGATAAGTGTCATTCAAGCAGTGCTGGCTGACATAAACATGAAGAAAGGGGAGTCAGAATGTCAATACTATATCGATAAGCTGGAATATTTGGAAGACAAGCAGAAAGACCCACGCATTGAGCAGTGCAAGAGCTTGCTTTGCCATGGGGAACTTCGCAACAAAAGTGGCACGAAACTGCACGTATTTCTGTTCACCGAGGTTCTGATTCTGACTCGACCTGTGACGCGGAATGACCGCCATTGCTTCCAGGTGTACCGTCAGCCAATCCCAGTCCAGGATCTTGTATTGGAAGACCTGCAGGATGGAGACGTCCGCATGGGAGGATCATTCAGAGGAGCCTTTAGTAACGCTGATAAAGCCAAAAACATTTTCCGGGTGCGCTTCCAGGACGCATCTCAGGGACAGTCGCACACACTGCAGGTCAACGACGTCTTCCACAAGCAACAGTGGCTCAACTGCCTCCGCAATGCCATGTCCACCCAGAAGGATTTGACACTCTCTGAGAATGAGCCCTTGACCACCCCAGCCACCGACGTTTGCGCCAAACGGCGCTCTTCTTCTGTCTCCACTGTCATCCAAATGGATGAAATGGATGAGAACTGTCCACGGGCTGCAGCCTCCGCCCCTTCCTCCCCTAGCTCTGAGGAGCCCCCCAGTCCTACACCCTCCGCCACCTCCACCCTCTCCTCATCCTCATCATCGTCTTCAATATCCGCCCCCATCCCCTCCCGCAAATCCAAAAAGGACAAGCGTTCGCTCTGCCCGTTGGGCAAGAGGAAGGAGACCATGGTGTAGATGGAGTGGCACCATGCGGAGGacttgtatttatgtgtgtgtgtatggttttTACAGCAGTGTTTCTGTTACTGTCCACAATGGCAGCTATTACTACCAAATCCCTCCCCCCAGCAAACCCTCCTTGGTCCACATGGGCCGCACCAGTACCAGAAAGACAGTATTTGTGAGGCGACTGTGTGGATCTCAAGGGATTGAAGATTGAAGACGCATCCCAATCactatgaaacactttgatttgTGTGAAAGCGCAAGATCACACAacttgtcttgtttactgttagtttggtcgttttattttattaataatgatttttctttttgtaattaaagtttatctttttttaaacttCTCAATAAGATATTTACTGtagctctttttgttttttaataaaagcacTGTGTTTAGCTTTTAGAAGGGAATACCACCCACTGAGAGGGGAAAAAGACCTCCAAAGCAATGAAAATTACTTTGTACTGAGTCTGAACCAAAGCTCTACTGGAAGGCAAGTCTTACAAGTACATTcccattaaacaatattttatcagctccattttatatttaaatcagaaggtatagttttttttttcaaaacaaatgctATGTCAGTAGCAATATGATTTATACATTTCCAATTGGAAAATTTGCTCTTTTGTTTATACAAAAACCCCAAAATCTGAGCCATATTTGTTTTCCACCCCCTTAAAATGATGGATGACTTTCAATGTAGCATCTTGCATGGAGCTTTACTTGTTGAGTCCTGCCTGTATTATCATGAGGGCCCAGTGCATGTACATGCCTGTCGAAGCAGAAAGTTGATGTAAAGTGGACTGTCGTGTAAAAAGTTGAATGAGGGCTAGAGAAATGTCGAGTTGAGATTTAGAAGGAAGCTTTGGAATAGAGTTGGAAATGACTAGATGGACTTGATGATTGACGCTACTTGATATTAGCAAGCATCCATGGATTTTTGGTTTGCTGTTATTTGTCATTTCGTAGTGTCTTCATGAAGTAGGAACGTTTGAAACACTGGTGTAAAGCCAGGGTGTTGTTTTGAGAAGGAAGATGAAAAGTATGTTTAGGAGAATGAACTGTTAAAGAAGGTTAAAGTATGTTATGaccacttcaaaaaaaaaaaaaaaaaatgtctgtaaaagTGTGTAACCGAAAGGAATAGATGTAAATTATTCAGAAGGACTGCTGTggactgtatgtacagtatgtggtgTAAAAATCAactattaaatgaacaataaaggTCTGTG
>TCONS_00055429
AGGCAATTTTTGAGTTGTCTCGAGGGGAACAGGACCTGATTGAAGACCTGAAGTTAGCCCGAAAGGCATACCATGACCCAATGCTGAAACTTTCTATTATGTCTGAAGAGGAGTTAACAGCCATCTTTGGAGATTTGGATGCTTACATTCCCCTTCATGAAGATCTTCTTGATCAATTGGCAAAGGCCACAGGTACGGATGGCACAGTGAGACAGATCGGCAAGATTGTTGTTGACTGGCTGCCAAGGTTAAATGCATACAGAGCATACTGTAGCAACCAACTAGCTGCCAAAGCCCTCCTCGATCAGAAGAAACAGGACCCAAGAGTTCAAGACTTCCTGCAGCGCTGCCTTGAGTCACCTTTCAGCAGGAAACTAGACTTATGGAGCTTCCTGGACATCCCTCGCTCACGTTTGGTCAAATACCCTCTTCTTCTGAAAGAGATTTTAAGACACACACCACCAGATCACCCAGACAAAGGAAGTCTTGAGCAAGCGATAAGTGTCATTCAAGCAGTGCTGGCTGACATAAACATGAAGAAAGGGGAGTCAGAATGTCAATACTATATCGATAAGCTGGAATATTTGGAAGACAAGCAGAAAGACCCACGCATTGAGCAGTGCAAGAGCTTGCTTTGCCATGGGGAACTTCGCAACAAAAGTGGCACGAAACTGCACGTATTTCTGTTCACCGAGGTTCTGATTCTGACTCGACCTGTGACGCGGAATGACCGCCATTGCTTCCAGGTGTACCGTCAGCCAATCCCAGTCCAGGATCTTGTATTGGAAGACCTGCAGGATGGAGACGTCCGCATGGGAGGATCATTCAGAGGAGCCTTTAGTAACGCTGATAAAGGTAAGTTGACACCTCTTAGTATTGTGTGAATCACACTCTTTCCTTTTTTGTTGTTTCCTTTGGCTCAACTGAATCCTTTTTTTCTCCCTATAGCCAAAAACATTTTCCGGGTGCGCTTCCAGGACGCATCTCAGGGACAGTCGCACACACTGCAGGTCAACGACGTCTTCCACAAGCAACAGTGGCTCAACTGCCTCCGCAATGCCATGTCCACCCAGAAGGATTTGACACTCTCTGAGAATGAGCCCTTGACCACCCCAGCCACCGACGTTTGCGCCAAACGGCGCTCTTCTTCTGTCTCCACTGTCATCCAAATGGATGAAATGGATGAGAACTGTCCACGGGCTGCAGCCTCCGCCCCTTCCTCCCCTAGCTCTGAGGAGCCCCCCAGTCCTACACCCTCCGCCACCTCCACCCTCTCCTCATCCTCATCATCGTCTTCAATATCCGCCCC
>TCONS_00055430
gttagagcacacacacacacacacagtgtgtttAGAAGTTAGGAAGCTCCGCTCAGGCGGACAATCACGAGTTGGGGGGACGTTGATGTTTTCAGTCCCGTTATGTTACATCACGCTTTTATTTAAGAACTACTTGTGGATTACTGTCAACCCTTGGAAATAACAGAAACCAGTCAGTGGATTTTACTGAAAGAAATGGTGGCTTACGATGAACCTTGTGTGGTACCTATCAAACGGACTTTACAAAAGATAGACTACCAGAACCAGGCGTACAAAGAACTAGAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGCCTCATTCCGGGGTGACGGGCGGTCTCCGGGCGTGCCCCAGCAGAAGCCATGCAGTAAGGCTGCAGCTCCCACACCACCGAAGCGCCGGAACAGCACGCTCTGGTCAGAGACCCTAGACGTCCACCAGAAAGGAACGTTTTCCACCAAAGAGATTAAGAGACAAGAGGCAATTTTTGAGTTGTCTCGAGGGGAACAGGACCTGATTGAAGACCTGAAGTTAGCCCGAAAGGCATACCATGACCCAATGCTGAAACTTTCTATTATGTCTGAAGAGGAGTTAACAGCCATCTTTGGAGATTTGGATGCTTACATTCCCCTTCATGAAGGTAAATAACCTACCATATTTACATGACACACCTAATTACTGCGTGAGATAACAAGTAGTGTTAacgtacttttt
>TCONS_00055431
CCATTGAATAGCTAGCTTCCCCTTTCTATTCATCCCCCCTAAAATAACCCGTTTTTAACTGTATTACGTATTATACAAACAGTTTACAGTAACGCAATCCAAGTCCACGTCTTTCAAATGGAAGAAACCGACGGATCTCCAGCGCCAATGGCAGAGCCAGTCAACGAAAGACCGAAGAGGAGCAAGAGAAAGTCGTCAATGGTGGAGGCGGACGGGTCCCCAGAGCGCACTTTCAAACGGCCATCTTTGAGACGAGGAAGCTCTTTTACCTTTCTGACACCTGGACCTCAGTGGGACTTCACACTGAAACGCAAGCGCAGGGAAAAGGATGATGCCGATGCAGTCAGTTTGTGCAGCTTTGACTTCAAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGC

Function

symbol description
net1 Enables transcription coactivator activity. Acts upstream of or within dorsal/ventral axis specification; mesendoderm development; and regulation of nodal signaling pathway. Located in nucleus. Is expressed in axial mesoderm; margin; and shield. Orthologous to human NET1 (neuroepithelial cell transforming 1).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:1900107 regulation of nodal signaling pathway biological_process
GO:0048382 mesendoderm development biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0005515 protein binding molecular_function
GO:0030295 protein kinase activator activity molecular_function

KEGG:

id description
ko04111 Cell cycle - yeast

ZFIN:

id description
ZDB-GENE-041121-18 Enables transcription coactivator activity. Acts upstream of or within dorsal/ventral axis specification; mesendoderm development; and regulation of nodal signaling pathway. Located in nucleus. Is expressed in axial mesoderm; margin; and shield. Orthologous to human NET1 (neuroepithelial cell transforming 1).

Ensembl:

ensembl_id ENSDARG00000032765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055427 False 3118 mRNA 0.45 9 11573568 11580948
TCONS_00055428 False 3062 mRNA 0.46 11 11573568 11594202
TCONS_00055429 False 1309 mRNA 0.49 6 11574907 11577253
TCONS_00055430 False 795 lncRNA 0.49 4 11576845 11580944
TCONS_00055431 True 479 mRNA 0.52 4 11577909 11603149

Neighbor

gene id symbol gene type direction distance location
XLOC_028572 pimr173 coding downstream 168601 11401018 ~ 11404967 (-)
XLOC_028571 BX649349.2 coding downstream 325283 11245332 ~ 11248285 (-)
XLOC_028570 BX784029.2 coding downstream 386632 11179509 ~ 11186936 (-)
XLOC_028569 prmt8b coding downstream 407607 11144600 ~ 11165961 (-)
XLOC_028568 BX784029.1 coding downstream 440951 11124613 ~ 11132617 (-)
XLOC_028574 NA coding upstream 3609 11606758 ~ 11606855 (-)
XLOC_028575 dre-mir-29b-2 coding upstream 5047 11608196 ~ 11608283 (-)
XLOC_028576 BX465862.4 coding upstream 7569 11610718 ~ 11692199 (-)
XLOC_028577 podxl coding upstream 129007 11732156 ~ 11751037 (-)
XLOC_028578 NA coding upstream 150481 11753630 ~ 11754856 (-)
XLOC_028555 NA non-coding downstream 737948 10766014 ~ 10835620 (-)
XLOC_028579 NA non-coding upstream 151847 11754996 ~ 11758042 (-)

Expression


Co-expression Network