G940682


Basic Information

Item Value
gene id G940682
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9465575 ~ 9465840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1072884
CCTTATGCCACTGCCATTTCTACAGTACAGCATTAGTCAGCACACACACAACTTCAGAAAGACTAATTTCAAGTGAATACACTCATAAAACTGAAGTCTTTAAGTTCAGTCTCCTCAATCTTGGCGACAGGTCAAAGATAAAAGTTGACATGCTGTGCTATAAGCCTCTCTTCAGCAGCAGTGATGATATCTCAATGGGACTGAAATAAACAACAGGACAGTGGTTCTATTATGGTGTAGTAGTGCAATGTTCTTCCTAATCTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1072884 True 266 lncRNA 0.39 1 9465575 9465840

Neighbor

gene id symbol gene type direction distance location
LOC118937311 LOC106579630 coding upstream 53298 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 59704 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 135992 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 168616 9278925 ~ 9296959 (+)
LOC110535246 tm14c coding downstream 706009 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 801424 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 840045 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 929598 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 1165524 10631364 ~ 10639422 (+)
G940688 NA non-coding upstream 4940 9460429 ~ 9460635 (+)
G940685 NA non-coding upstream 6764 9458608 ~ 9458811 (+)
G940679 NA non-coding upstream 16583 9448757 ~ 9448992 (+)
G940678 NA non-coding upstream 17166 9448156 ~ 9448409 (+)
G940670 NA non-coding upstream 31555 9433714 ~ 9434020 (+)
G940681 NA non-coding downstream 192 9466032 ~ 9468365 (+)
G940711 NA non-coding downstream 51981 9517821 ~ 9519201 (+)
G940715 NA non-coding downstream 57711 9523551 ~ 9523869 (+)
G941246 NA non-coding downstream 141891 9607731 ~ 9608425 (+)
G941278 NA non-coding downstream 166208 9632048 ~ 9632307 (+)
LOC118937463 NA other upstream 610138 8845565 ~ 8855476 (+)
G940376 NA other upstream 813054 8651504 ~ 8652993 (+)
G940313 NA other upstream 924708 8532540 ~ 8540867 (+)
G940247 NA other upstream 1025800 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1083995 8379847 ~ 8497020 (+)
G941893 NA other downstream 779269 10245109 ~ 10245506 (+)
G942702 NA other downstream 1644886 11110726 ~ 11111336 (+)
G944957 NA other downstream 3921710 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4598708 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4689514 14154784 ~ 14202999 (+)

Expression


Co-expression Network