G940681


Basic Information

Item Value
gene id G940681
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9466032 ~ 9468365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1072882
CTTCCCTTTGGTTTTTTTATTGGCACAGGACAACCTTCAGTAGACTTTAATAACATAAACCATAGCGTTAAAGCAGTATACATATTATAAGGAAGGCTTATAGGGAAGATGATCATATAAAACCTGGAGAAAGGTAAACAGGGTTTACGTGACAAAACACAGGCTGGGTGAAAGTGAAACAACTCAAACCAGCTGGCAGTTTAATACACCGGATTAAGTTACCACAATTAAGAAAGCCAACAACTCTTTTGTTGTGCAAACGCTGTGATTATAtccaatatatatacacacacacacacacacacacacaagtatgtggacatcctttaaaatgagtggatttggctatttcggccacacccgttgctgacaggtgtataaaatcgagcacagtcatgcaatctccatagacaaacatttggcattagaatggccttcctgaagagctcaagagactttcaacgtggcaccgtcaaaggatgccacctttccaacataaCCTGCTTGTGCTGCCCCGgtgaactgtaagtgctgttattgtgaagtggaagcgtctcagagcaacaacggctcaaccacaaagtggcaggccacacaagctcacaaaacgaGATCGCCGAGTGAAGAAGCACATACAAATCACCTGTCCTCGGATACAACACTCACCTCCGAGTTCCAAACggactctggaagcaacatcagcactaGAACTGTTTttcgggagcttaatgaaatgggtttccatgcacaatgccaagtgtcggctggagtggtgtaaagctcgccgccattggactctggaacagtggaaaagcgttctctgaagtgatgaatcacacgaatctggatgccaggagaacgctacttgccccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctggggctgtttatcatggttcgggccccttagttccagtgaagaggaatcttaacgctacagcatacaattacattctagctttgtggcaacagtttgggtaagGCCCTTTTGTGTTTCAGcaccctgtgcacaaagcgaggtccataaagaactggtttgtcaagatcgatgtggaagaacttgactggcctgcacagaaccctgacctcaactccatcgaacacctctgGGATTAATTGGAACAACTGTGAGCCCAGCctaaatcgcccaacatcagtgcccgacctcactaatgctcccgCAGCAAAatgtcaacatctagtggaaagcctatggaggctattatagcagcaaagggggaaccaactccatatcaatgcctatgattttggaatgagatgttcgacaagcgggtgtccacatacttttgatcatgtagtgtatattagcTGTGATTTTCAGAGCTAATGGCTAAATCCAGTCTGCTTGTGTGAGTGGTTTGACTGTGTATTGTCGCTCGGATGTTGTCACAAAAGGATTTCCCGCCCCCTGGTAAGAGGGTGAAATGACAATGCGTGGCTGTCACCCAGGGCTCTGACGTTGGACAGAGGAGCACTGGAGCCTCTATGGCAGCTGGTAGTGTGCCCTCTGCCCCCTCAGCGTCAACACACGGACTGATTCGAGTGACTGAGCTAGAGGCTGCTGCCCACACTGCTGGTGGAACAGCAGAGGCAGCAGCTTGAGAAACAAGACTAAATTCATGAGGGCGGAAAGTTGATAGTGGACTGGACAACTGTGGAGGATGATGATTACATAGTTGAACACACAGTCGGGCGGACTggacatattttgttttgtttgaagAAAATGTTAATACATTGAAAAACGCAATAGCAGGGATTTCTTTAAAAGGGACATAGTAAAACGAATAAGTCATTTGTAATTTTTAATAATACTTTATCACATTCAAGGCTCAGGTTACGAGAAAAAGAGGcatccctgcacattgaccctGACGACTATAGACTCCCAACAACCAACTCACACAAAAACAAACCATCCGTCTTCTTTGTGATCATTTTCTCCATTGCATGTGTTATTCGCCTGGGGTTTCAGAGGGAAAAAAATAACCGCATGTCTCCAAGGCAACGGAGGGAGGGGGCCCACAGTGGTGTTAGGTATGTTGAGACGTCAGCACACGCCTGTGTACTCCTCACGCCGGCCCTCGAACATCCTGGCAGCCAGCCTAAGACCTCAGTGGTGGCCGCTGGTGTACACTCTGTTCCTCAGGACCACCACTGGGGGTAGGTGGTGCCGGACACCGGTGTAGTGCTGGACGTGGTCAAACCACCGTGTCACATTCATGTGCTTCTCCTTCTCCTGGATGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1072882 True 2309 lncRNA 0.47 2 9466032 9468365

Neighbor

gene id symbol gene type direction distance location
LOC118937311 LOC106579630 coding upstream 53755 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 60161 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 136449 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 169073 9278925 ~ 9296959 (+)
LOC110535246 tm14c coding downstream 703484 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 798899 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 837520 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 927073 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 1162999 10631364 ~ 10639422 (+)
G940682 NA non-coding upstream 192 9465575 ~ 9465840 (+)
G940688 NA non-coding upstream 5397 9460429 ~ 9460635 (+)
G940685 NA non-coding upstream 7221 9458608 ~ 9458811 (+)
G940679 NA non-coding upstream 17040 9448757 ~ 9448992 (+)
G940678 NA non-coding upstream 17623 9448156 ~ 9448409 (+)
G940711 NA non-coding downstream 49456 9517821 ~ 9519201 (+)
G940715 NA non-coding downstream 55186 9523551 ~ 9523869 (+)
G941246 NA non-coding downstream 139366 9607731 ~ 9608425 (+)
G941278 NA non-coding downstream 163683 9632048 ~ 9632307 (+)
G941285 NA non-coding downstream 168846 9637211 ~ 9637489 (+)
LOC118937463 NA other upstream 610595 8845565 ~ 8855476 (+)
G940376 NA other upstream 813511 8651504 ~ 8652993 (+)
G940313 NA other upstream 925165 8532540 ~ 8540867 (+)
G940247 NA other upstream 1026257 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1084452 8379847 ~ 8497020 (+)
G941893 NA other downstream 776744 10245109 ~ 10245506 (+)
G942702 NA other downstream 1642361 11110726 ~ 11111336 (+)
G944957 NA other downstream 3919185 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4596183 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4686989 14154784 ~ 14202999 (+)

Expression


Co-expression Network