G941535


Basic Information

Item Value
gene id G941535
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 9898115 ~ 9898331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1073836
CACAACCACAGtgttgacagctacagtataggcTATGTCCATGAACTTGTAGGGCTGTTGCCACAACCACAGtgttgacagctacagtataggcTATGTCCATGAACTTGTAGGGCTGCTGCCACAATCCCAGtgttgacagctacagtataggcTCTGACCATGAACTTGTAGGGCTGTTGCCACAACCCCAGTattgacagctacagtataggcC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1073836 True 217 lncRNA 0.49 1 9898115 9898331

Neighbor

gene id symbol gene type direction distance location
LOC118937311 LOC106579630 coding upstream 485838 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 492244 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 568532 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 601156 9278925 ~ 9296959 (+)
LOC110535246 tm14c coding downstream 273518 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 368933 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 407554 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 497107 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 733033 10631364 ~ 10639422 (+)
G941528 NA non-coding upstream 5968 9891920 ~ 9892147 (+)
G941527 NA non-coding upstream 6267 9890620 ~ 9891848 (+)
G941382 NA non-coding upstream 36705 9861211 ~ 9861410 (+)
G941381 NA non-coding upstream 37163 9860738 ~ 9860952 (+)
G941295 NA non-coding upstream 233806 9662747 ~ 9664309 (+)
G941598 NA non-coding downstream 48296 9946627 ~ 9946843 (+)
G941605 NA non-coding downstream 59925 9958256 ~ 9958491 (+)
G941606 NA non-coding downstream 61045 9959376 ~ 9959659 (+)
G941607 NA non-coding downstream 61349 9959680 ~ 9960531 (+)
G941608 NA non-coding downstream 62666 9960997 ~ 9961874 (+)
LOC118937463 NA other upstream 1042678 8845565 ~ 8855476 (+)
G940376 NA other upstream 1245594 8651504 ~ 8652993 (+)
G940313 NA other upstream 1357248 8532540 ~ 8540867 (+)
G940247 NA other upstream 1458340 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1516535 8379847 ~ 8497020 (+)
G941893 NA other downstream 346778 10245109 ~ 10245506 (+)
G942702 NA other downstream 1212395 11110726 ~ 11111336 (+)
G944957 NA other downstream 3489219 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4166217 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4257023 14154784 ~ 14202999 (+)

Expression


Co-expression Network