XLOC_028578


Basic Information

Item Value
gene id XLOC_028578
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11753630 ~ 11754856 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058104
aaatatgcattaaataaataaaataaatgtaaacatgaataaaataaaataaaccatgcattaaataaataaaataaatgtaaacatgaataaaatgtaataaaacatgcattaaataaaaaatacattcagacatgaattaaataaataaaataaatttaaacatgcattaaataaataaaacaaaacgaaaaaaaaaaaaaaaaacagtccaccAATAAATCCAGCACAACACAACTGAGAATCAGCATTCAGGCTTgacaacataaacacacacacacacacacacacacacacacgactcaCATCTAAGAACAGAAGCCGAATGCAAAAAGACAATTAAAAGGCCAAACACACTATCATAGCATCTATTTTAGGACAGACGGAGACGCCCCGGAAGCACAACCAACACCCATGTGTTTATCTGCCTTTGTCCAGCACCCAAAACATTTCCCCTCCGCCATTCACAACAATCCCAAATGACATGACAGCAGTTCTGTCACTCTTTCCTATAGTTGGAGTTAGTGCAGTAATTAATGGAGCAGAAGTAGATGGCCATTAGAGGAGGTCACATAGGTCCATCAAAGTCAAACTCAATGGAGGTTTTGTGTTTTATGGCGCTGAAAAGTAAACATGAATTTGTCGGGGTGAAGCAGGAGGCTTTTGAAGTTTGGTTGTCTTGGTTTTTGGCTGGTGATTGTGGCGTGTTGTAGCCTTCACAGCAGCTGCTCTTATACACACAGCcttcagagaaacacacacacttacacctgACTTTTTCAGCTCTTTCttggaaaatgaaaatgaaaataacattgcATGGCAATATAGTAAAAAAAGATTtgatttacatacatttaaagatatatagcattgtgggaaaaaaattaaatttacatCCAAAACACATACAATTGATTTAATTTCAAgatttaagtcttttgtgtctcctgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058104 True 955 lncRNA 0.34 2 11753630 11754856

Neighbor

gene id symbol gene type direction distance location
XLOC_028577 podxl coding downstream 2593 11732156 ~ 11751037 (-)
XLOC_028576 BX465862.4 coding downstream 61431 11610718 ~ 11692199 (-)
XLOC_028575 dre-mir-29b-2 coding downstream 145347 11608196 ~ 11608283 (-)
XLOC_028574 NA coding downstream 146775 11606758 ~ 11606855 (-)
XLOC_028573 net1 coding downstream 150481 11573568 ~ 11603149 (-)
XLOC_028579 NA coding upstream 140 11754996 ~ 11758042 (-)
XLOC_028580 NA coding upstream 3426 11758282 ~ 11803397 (-)
XLOC_028581 cyb5r3 coding upstream 49819 11804675 ~ 11810799 (-)
XLOC_028582 btbd11a coding upstream 58922 11813778 ~ 12007404 (-)
XLOC_028583 si:dkey-222f8.3 coding upstream 279017 12033873 ~ 12040345 (-)
XLOC_028571 BX649349.2 non-coding downstream 505345 11245332 ~ 11248285 (-)
XLOC_028570 BX784029.2 non-coding downstream 566694 11179509 ~ 11186936 (-)
XLOC_028584 NA non-coding upstream 301079 12055935 ~ 12056427 (-)
XLOC_028585 NA non-coding upstream 302952 12057808 ~ 12058631 (-)
XLOC_028586 NA non-coding upstream 305128 12059984 ~ 12061389 (-)

Expression


Co-expression Network