G941648 (LOC106604999)


Basic Information

Item Value
gene id G941648
gene name LOC106604999
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10004719 ~ 10004947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1073955
cctccactcctccaacaccaTCTTCACCACCAAGAGTTCTCGATTGCCAACATTGTAGTTCCTATCAGCAGGATTAGGAcgatgggacaggaaggcacagggatgaagcttctggtcctgggcagatcgctgggacaggatggcccccacGCCAACATCCAAAGCATCCACTTCCACCACAAGTTGACGCGAGGGGTCTGGATGGATGAGGATGGGTGCTGTTGTGAAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106604999

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1073955 True 229 lncRNA 0.55 1 10004719 10004947

Neighbor

gene id symbol gene type direction distance location
LOC118937311 LOC106579630 coding upstream 592442 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 598848 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 675136 9319032 ~ 9329583 (+)
LOC110535237 LOC106579624 coding upstream 707760 9278925 ~ 9296959 (+)
LOC110535246 tm14c coding downstream 166902 10171849 ~ 10175528 (+)
LOC118937312 NA coding downstream 262317 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 300938 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 390491 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 626417 10631364 ~ 10639422 (+)
G941638 NA non-coding upstream 8175 9996328 ~ 9996544 (+)
G941614 NA non-coding upstream 32141 9971239 ~ 9972578 (+)
G941613 NA non-coding upstream 34075 9970422 ~ 9970644 (+)
G941611 NA non-coding upstream 35482 9968193 ~ 9969237 (+)
G941609 NA non-coding upstream 39464 9961947 ~ 9965255 (+)
G941672 NA non-coding downstream 18368 10023315 ~ 10023665 (+)
G941674 NA non-coding downstream 18889 10023836 ~ 10024063 (+)
G941682 NA non-coding downstream 31696 10036643 ~ 10036876 (+)
G941697 NA non-coding downstream 51502 10056449 ~ 10056650 (+)
G941710 NA non-coding downstream 69693 10074640 ~ 10075160 (+)
LOC118937463 NA other upstream 1149282 8845565 ~ 8855476 (+)
G940376 NA other upstream 1352198 8651504 ~ 8652993 (+)
G940313 NA other upstream 1463852 8532540 ~ 8540867 (+)
G940247 NA other upstream 1564944 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1623139 8379847 ~ 8497020 (+)
G941893 NA other downstream 240162 10245109 ~ 10245506 (+)
G942702 NA other downstream 1105779 11110726 ~ 11111336 (+)
G944957 NA other downstream 3382603 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 4059601 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 4150407 14154784 ~ 14202999 (+)

Expression


Co-expression Network