XLOC_002858


Basic Information

Item Value
gene id XLOC_002858
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 31262852 ~ 31295006 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005294
ATCAGCTCTTCCAGGGCAATAGTGGATGCTGTGGGCTGTTTGTGGATGAGGAACGAAGAAAACAAGAGTGGAGAAAGAAACTGATTTAAATAAAGCGAGTAGAGGGTAAAGAATGGAATGAGAAAACAAAGAATGCGAGTCACTCCCACCTGAGACTCACTAGCCTGAGTTGAACTGACTCCATGCCTGTGGAGCGTAGGCTTCAGGGAACAGAAGGACCCTTGAGTTTAATCTTTCTCGGGGCAGATCTGGGTCAGTGAAGGCCAACAGAAGGCTGGATCCCATGGGGCAATACCTGATATCCCTGAATGATTCCATTGTGAGCATCATGAGGTGGAGGCTCCCAGCTGAGATGCACAGTGTCATTACGCTCAGCAGGCATTGTTATGGACACATCCTGAGGTGCAGCGCTGGGGACTGACAACACAACACATGCTTACTGGCTGCTGCCGTAGGGCCGCACTTTGAACTCATACTTGTAGCCTCTCTTCAGAGGTCCAACATGGGTGTGAAGGCTAGGCTGAGGAACCCTTTGAGCCGTCCAGTCTGAGCTGGCAGGCAGGAGAGAGCGATACAGCACCTCAAAGCCTTCAAGATAATGAGGCTGTGAACCAAATGACTGCAACTAtacagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagagaaCTGATCATGATTTGATGGTgtttaaagagataattcactCAAATTAAGTTGAATCCCCATTTCCTGACCCTCAAGTTCCAAACCTGTATAAATTTATTTCTTCTAATGAacacaaaagtatatattttgaagagtcTTGGCCATTGATTTCTATTCAACAATGTGAAAACTCTGTGTAAGAAACCCATCCTATTTTTTCCATATTAAGATTATCATCTGAAAATAAGAACTTGACATTAccttaacattaaacaaaagagTTTGAGAATGTGATCC
>TCONS_00006076
ctcgcATAACTTACATTACAAAGTCCACAGGCTTTCAGAAGTTTTATTAGCCTACGTGCTATTCACACATTGTCTATTGAAAAAGTGATCAATATTAGGAATTTTTACGCACGGTCCCTTTAACATatacattttcagtaataaaCTGTGCGACAGTTAACAGCCGAGACCGTAAATCTTCGGTTTCTACGGTTACGGCAGGAACTTCCACCTCACCGAAGGGCATGAAATCAGCTCTTCCAGGGCAATAGTGGATGCTGTGGGCTGTTTGTGGATGAGGAACGAAGAAAACAAGAGTGGAGAAAGAAACTGAGTTGAACTGACTCCATGCCTGTGGAGCGTAGGCTTCAGGGAACAGAAGGACCCTTGAGTTTAATCTTTCTCGGGGCAGATCTGGGTCAGTGAAGGCCAACAGAAGGCTGGATCCCATGGGGCAATACCTGATATCCCTGAATGATTCCATTGTGAGCATCATGAGGTGGAGGCTCCCAGCTGAGATGCACAGTGTCATTACGCTCAGCAGGCATTGTTATGGACACATCCTGAGGTGCAGCGCTGGGGACTGACAACACAACACATGCTTACTGGCTGCTGCCGTAGGGCCGCACTTTGAACTCATACTTGTAGCCTCTCTTCAGAGGTCCAACATGGGTGTGAAGGCTAGGCTGAGGAACCCTTTGAGCCGTCCAGTCTGAGCTGGCAGGCAGGAGAGAGCGATACAGCACCTCAAAGCCTTCAAGATAATGAGGCTGTGAACCAAATGACTGCAACTAtacagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagagaaCTGATCATGATTTGATGGTgtttaaagagataattcactCAAATTAAGTTGAATCCCCATTTCCTGACCCTCAAGTTCCAAACCTGTATAAATTTATTTCTTCTAATGAacacaaaagtatatattttgaagagtcTTGGCCATTGATTTCTATTCAACAATGTGAAAACTCTGTGTAAGAAACCCATCCTATTTTTTCCATATTAAGATTATCATCTGAAAATAAGAACTTGACATTAccttaacattaaacaaaagagTTTGAGAATGTGATCC

Function

GO:

id name namespace
GO:0000338 protein deneddylation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005294 False 968 lncRNA 0.44 4 31262852 31294777
TCONS_00006076 True 1113 lncRNA 0.43 4 31262852 31295006

Neighbor

gene id symbol gene type direction distance location
XLOC_002857 pknox2 coding downstream 42294 31019607 ~ 31220558 (-)
XLOC_002856 panx3 coding downstream 246046 30997238 ~ 31016806 (-)
XLOC_002855 opcml coding downstream 477351 30617826 ~ 30785501 (-)
XLOC_002854 CT737197.1 coding downstream 731595 30531143 ~ 30531257 (-)
XLOC_002853 lim2.1 coding downstream 1359687 29896275 ~ 29903165 (-)
XLOC_002859 robo3 coding upstream 3966 31298972 ~ 31563049 (-)
XLOC_002860 fez1 coding upstream 443495 31738501 ~ 31782616 (-)
XLOC_002861 vps26bl coding upstream 505206 31800212 ~ 31805923 (-)
XLOC_002862 NA coding upstream 782805 32077811 ~ 32084624 (-)
XLOC_002863 NA coding upstream 921407 32216413 ~ 32250846 (-)
XLOC_002845 CU861448.1 non-coding downstream 1554670 29708068 ~ 29708182 (-)
XLOC_002843 NA non-coding downstream 1771765 29266270 ~ 29491087 (-)
XLOC_002841 BX005332.1 non-coding downstream 2124848 29128202 ~ 29138004 (-)
XLOC_002838 BX537347.1 non-coding downstream 2339219 28923517 ~ 28923633 (-)
XLOC_002867 NA non-coding upstream 1289679 32584685 ~ 32591462 (-)
XLOC_002870 NA non-coding upstream 1381804 32676810 ~ 32678245 (-)
XLOC_002871 NA non-coding upstream 1484874 32779880 ~ 32780290 (-)

Expression


Co-expression Network