G941836 (gcm2)


Basic Information

Item Value
gene id G941836
gene name gcm2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10239288 ~ 10241490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1074157
CTTCGTAGGTAATAAATGCTTTATATATGATGATCAACAAACAGGTTATTAATGGTTTATGAGGAAAGAAGACTGTTAAATAAACTGTTACCAGAATCTCAGTTGAGAATATGAGCCCACAAACCTGGAAGAATATGACTTTTCCATCTATTCTCCAGAAGTTGGTGACGGGGTAGCCACTGTGTCCTCTACATGGCATCAGCTCCAGGGCAGAGTTACAGCTGGGGCACAGCTTCTCTGGAGAACAAccactttgttgtttttgtcgtgCTTTGTCGCAAATCGCCGGTCTGAGCTGGAGTTTGCTTCCATCAGCCAGCGTGCAGTTTCGACCGCATACTACGACACCCAGGCAGGACTTCTTGAGAATCTGACAGTTGTGGTTGTTGGTGTTCCGCATAGCCCATCCGCTCAGGTGGCGCTGTGCGTTCTTGTCCTCGCCATTGTAGATGTAACGCACATAACCATCCGTCCACTCCTGAAAAGCGTCATACTGCTTTGTGTCCTGTCAGAATTAGGGGGAAATATACATTCCTTACTTTATAGT

Function

symbol description
gcm2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development; epidermal cell fate specification; and metal ion homeostasis. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; head; macrophage; pharynx; and yolk. Human ortholog(s) of this gene implicated in familial isolated hypoparathyroidism and hyperparathyroidism. Orthologous to human GCM2 (glial cells missing transcription factor 2).

NR:

description
PREDICTED: chorion-specific transcription factor GCMb isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1074157 True 547 lncRNA 0.46 2 10239288 10241490

Neighbor

gene id symbol gene type direction distance location
LOC110535246 tm14c coding upstream 63760 10171849 ~ 10175528 (+)
LOC118937311 LOC106579630 coding upstream 827011 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 833417 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 909705 9319032 ~ 9329583 (+)
LOC118937475 NA coding upstream 948424 9290727 ~ 9290864 (+)
LOC118937312 NA coding downstream 25774 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 64395 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 153948 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 389874 10631364 ~ 10639422 (+)
vapa vapa coding downstream 424717 10666207 ~ 10671992 (+)
G941808 NA non-coding upstream 60505 10178229 ~ 10178783 (+)
G941804 NA non-coding upstream 69019 10170010 ~ 10170269 (+)
G941768 NA non-coding upstream 104748 10134337 ~ 10134540 (+)
G941710 NA non-coding upstream 164128 10074640 ~ 10075160 (+)
G941697 NA non-coding upstream 182638 10056449 ~ 10056650 (+)
G941838 NA non-coding downstream 377 10241867 ~ 10244420 (+)
G941894 NA non-coding downstream 4499 10245989 ~ 10246361 (+)
G941915 NA non-coding downstream 37145 10278635 ~ 10285304 (+)
G941925 NA non-coding downstream 54105 10295595 ~ 10296629 (+)
G941968 NA non-coding downstream 144334 10385824 ~ 10386095 (+)
LOC118937463 NA other upstream 1383851 8845565 ~ 8855476 (+)
G940376 NA other upstream 1586767 8651504 ~ 8652993 (+)
G940313 NA other upstream 1698421 8532540 ~ 8540867 (+)
G940247 NA other upstream 1799513 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1857708 8379847 ~ 8497020 (+)
G941893 NA other downstream 3619 10245109 ~ 10245506 (+)
G942702 NA other downstream 869236 11110726 ~ 11111336 (+)
G944957 NA other downstream 3146060 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3823058 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3913864 14154784 ~ 14202999 (+)

Expression


Co-expression Network