G941838


Basic Information

Item Value
gene id G941838
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10241867 ~ 10244420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1074159
CTGAGGCAGTTTTGGGTCGTTGATATCCCACGTTAACTTCATACCGAAGGAACAAACACAGTCGGGGTCATCAAACTGTTCCGAGGACTTTGCCATCTTGTAAGATTCTCTCAATTTGACGGTTTTTGAACTTGACTCATAGCAGGATTCATCAATAGGCCTACAGCTAGCGTCCCCTACCCGCGCACCTTGTATCCCCTGTCTTTTATCTCAATCCAATGCTCCCTTTGCTTACTGAGTAGTGTTACGCGAAGCCACGGGAGTAGCAAGGTGAATGACTACAGGTACGCTGTCTCGTCTATGtaaaggaggaggaggcaggacTAGAAAATATGTCTAGCCTCAGCTCTGTTGAGGCTGAGCACTGTGCACTTTCAGTTCACCTGACCCGTGGCACTGACCTCCACTTATCCTACTGCATGGCGGTTTCCCCGAGCATTCCTTCCAAGCACTGTGAACTTGATAGAA

Function

NR:

description
chorion-specific transcription factor GCMb-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1074159 True 468 lncRNA 0.49 2 10241867 10244420

Neighbor

gene id symbol gene type direction distance location
LOC110535246 tm14c coding upstream 66339 10171849 ~ 10175528 (+)
LOC118937311 LOC106579630 coding upstream 829590 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 835996 9357029 ~ 9405871 (+)
LOC100305285 pdcd6 coding upstream 912284 9319032 ~ 9329583 (+)
LOC118937475 NA coding upstream 951003 9290727 ~ 9290864 (+)
LOC118937312 NA coding downstream 22844 10267264 ~ 10269419 (+)
LOC110535248 LOC106579638 coding downstream 61465 10305885 ~ 10367679 (+)
LOC110536547 LOC106579641 coding downstream 151018 10395438 ~ 10624020 (+)
LOC110535252 LOC106579643 coding downstream 386944 10631364 ~ 10639422 (+)
vapa vapa coding downstream 421787 10666207 ~ 10671992 (+)
G941836 gcm2 non-coding upstream 377 10239288 ~ 10241490 (+)
G941808 NA non-coding upstream 63084 10178229 ~ 10178783 (+)
G941804 NA non-coding upstream 71598 10170010 ~ 10170269 (+)
G941768 NA non-coding upstream 107327 10134337 ~ 10134540 (+)
G941710 NA non-coding upstream 166707 10074640 ~ 10075160 (+)
G941894 NA non-coding downstream 1569 10245989 ~ 10246361 (+)
G941915 NA non-coding downstream 34215 10278635 ~ 10285304 (+)
G941925 NA non-coding downstream 51175 10295595 ~ 10296629 (+)
G941968 NA non-coding downstream 141404 10385824 ~ 10386095 (+)
G941982 NA non-coding downstream 154400 10398820 ~ 10399079 (+)
LOC118937463 NA other upstream 1386430 8845565 ~ 8855476 (+)
G940376 NA other upstream 1589346 8651504 ~ 8652993 (+)
G940313 NA other upstream 1701000 8532540 ~ 8540867 (+)
G940247 NA other upstream 1802092 8439480 ~ 8439775 (+)
LOC110536544 LOC106590277 other upstream 1860287 8379847 ~ 8497020 (+)
G941893 NA other downstream 689 10245109 ~ 10245506 (+)
G942702 NA other downstream 866306 11110726 ~ 11111336 (+)
G944957 NA other downstream 3143130 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3820128 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3910934 14154784 ~ 14202999 (+)

Expression


Co-expression Network