XLOC_028581 (cyb5r3)


Basic Information

Item Value
gene id XLOC_028581
gene name cyb5r3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 11804675 ~ 11810799 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055442
AGTATTTCGCCCTCTCCAGGAAGAGCTTGTCACTTTGACAAGGCTGCTAACTTTCTAGTAAAGCTATTATTAGCCTGTAAGTGTTATTATCATTCAGTGATACTTGACAGAGTACCGTAAACACCACAGGAGAAAATGTCTTTCATCTTTAACCTCATCACTGGTAGCTGTCAATTCGTGCTTGATTTTCTCCGAAGACTCTTTGGTTTTAAGTCGAGACCAGCCATCACCCTTGAAGATCCCGATGTAAAATACCCATTGCGTCTTGTTGACAAAGAGATTATAAGCCATGACACAAGAAGATTTCGATTTGCTTTAAAATCACCCGATCATGTTCTTGGACTTCCTATTGgtcAACACATCTACTTGTCTGCCAAAATTGATGGCAACCTTGTGGTGAGGCCTTACACGCCGGTGTCTAGTGATGATGATAAGGGCTTCGTGGATCTAGTTGTCAAGATATACTACAAAAATATCCATCCAAAGTTTCCAGACGGAGGCAAGATGTCCCAATACTTGGAGAGCCTTCGCATTGGTGACACAATTGATTTCAGGGGACCAAGTGGACTGCTGGTTTACAAAGGCAAAGGATCGTTTGCAATCAGGCCAGATAAGAAATCAGACGCTGTGATAAAAACTGCTAAACATGTTGGCATGATTGCTGGGGGAACAGgCATTACTCCCATGCTCCAGATCATCCAAGCAGTCATGAAAGATCCAAAGGATGACACAGTGTGTTACTTACTCTTTGCAAACCAGACAGAAAAAGACATTCTCCTACGCCCTGAGTTGGAGGAGATCATGGCCAATCACCCGACACGGTTTAAGCTGTGGTACACCGTCGACAGAGCACCAGACGGTTGGGAGTACAGTCAAGGCTTCATCAATGAAGACATGGTGAGAAAGCACCTTCCTTCACCCGGAAACGAAACACTCGTCTTGATGTGTGGACCTCCTCCCATGATTCAGTTCGCCTGCAACCCAAGTCTGGACAAGGTGGGCCATTCCAATGACAGGCGCTTCATGTTCTAGATGGTTCTACAGGGGAATCATCTGAAACCGAACAGATTAAGCTTTAACATATTGCAAATAAATCCAGCCAAGCTACTACCTGGCTATTTATATAGTCCAAAAGAATTGGAAGGGTGCAAAATATATGAGCTGTTTACCTGAGAAGCCTCCGCATGCAGAAATCTGTTATTGCCAATCATTATGTGTTTTATGCcttaaaagcaaacaaaaacagtTGCTTTCATTATGTGAGCAGGTGATGTTAGAATGAAATCACTCAATATGATTCACTTTGCTTTATTTATGCATCTTAAAAAACACCTATATTTGtggatcattattattattttagtttgcgGTGTTGCACATTTTTCCATCAACAGCAACAAGCTGTTTGTTAAACAGACAAGGTTTCTGTTCATTAGTTTTACACTATGCACATTACTGTAATCTTGTGACAGTGGAGACTGGTTTTCTTCCGTTTAACATGTGTATTTGTCTTTATTCTGGTCCATCACAATAGTTTGTCTCCCTTATCTCAGTCAGTTTATCAGTCCGTTAGGGGAAAAATGCAATTGGGAGTTTGAGATGAGAGAAAGAAACTAACAAAACACCAACAACCAGATGGTTATCTTTGTTAGGCTGAAGTGAACAAATCAAGATGTCATCTAACAATATTCAGTCTGTCCTTTGCATTAAGTGCCTTTCTGTCAACACAGTTGCATTAAGTTTGATTCACTTCTAGTCTATCATTCCATACAGGTCATGCTCATATTTTTATTCCACTGCCTGTTTGCAGTTCATGTTACTTGTGTGCAtggacaataaataaaaatattttgctataatattacattaatcaataaaatataaacttGA
>TCONS_00055443
TCTGTGTGTTGTTGTAGCTCATCACTGGTAGCTGTCAATTCGTGCTTGATTTTCTCCGAAGACTCTTTGGTTTTAAGTCGAGACCAGCCATCACCCTTGAAGATCCCGATGTAAAATACCCATTGCGTCTTGTTGACAAAGAGATTATAAGCCATGACACAAGAAGATTTCGATTTGCTTTAAAATCACCCGATCATGTTCTTGGACTTCCTATTGgtcAACACATCTACTTGTCTGCCAAAATTGATGGCAACCTTGTGGTGAGGCCTTACACGCCGGTGTCTAGTGATGATGATAAGGGCTTCGTGGATCTAGTTGTCAAGATATACTACAAAAATATCCATCCAAAGTTTCCAGACGGAGGCAAGATGTCCCAATACTTGGAGAGCCTTCGCATTGGTGACACAATTGATTTCAGGGGACCAAGTGGACTGCTGGTTTACAAAGGCAAAGGATCGTTTGCAATCAGGCCAGATAAGAAATCAGACGCTGTGATAAAAACTGCTAAACATGTTGGCATGATTGCTGGGGGAACAG

Function

symbol description
cyb5r3 Enables NADH dehydrogenase activity. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in breast cancer and methemoglobinemia. Orthologous to human CYB5R3 (cytochrome b5 reductase 3).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0071949 FAD binding molecular_function
GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3281 Enables NADH dehydrogenase activity. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in breast cancer and methemoglobinemia. Orthologous to human CYB5R3 (cytochrome b5 reductase 3).

Ensembl:

ensembl_id ENSDARG00000005891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055442 False 1890 mRNA 0.40 9 11804675 11810799
TCONS_00055443 True 537 mRNA 0.44 5 11809137 11810365

Neighbor

gene id symbol gene type direction distance location
XLOC_028580 NA coding downstream 1278 11758282 ~ 11803397 (-)
XLOC_028579 NA coding downstream 46633 11754996 ~ 11758042 (-)
XLOC_028578 NA coding downstream 49819 11753630 ~ 11754856 (-)
XLOC_028577 podxl coding downstream 53638 11732156 ~ 11751037 (-)
XLOC_028576 BX465862.4 coding downstream 112476 11610718 ~ 11692199 (-)
XLOC_028582 btbd11a coding upstream 2979 11813778 ~ 12007404 (-)
XLOC_028583 si:dkey-222f8.3 coding upstream 223074 12033873 ~ 12040345 (-)
XLOC_028584 NA coding upstream 245136 12055935 ~ 12056427 (-)
XLOC_028585 NA coding upstream 247009 12057808 ~ 12058631 (-)
XLOC_028586 NA coding upstream 249185 12059984 ~ 12061389 (-)
XLOC_028575 dre-mir-29b-2 non-coding downstream 196392 11608196 ~ 11608283 (-)
XLOC_028589 CR792454.1 non-coding upstream 311995 12122794 ~ 12224825 (-)
XLOC_028590 NA non-coding upstream 419227 12230026 ~ 12238811 (-)

Expression


Co-expression Network