XLOC_028583 (si:dkey-222f8.3)


Basic Information

Item Value
gene id XLOC_028583
gene name si:dkey-222f8.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12033873 ~ 12040345 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055445
tgctctttGACACACCCAACAAAACCACAACTTGTCATCATCGCATGACTAAACGTGTTTCTTTGAATTAGAGAAGTGGATTAACCTGCAAATATGGCCAAAGGTCAATGCACCAATCAGGAGCTCTCAAATCTGCTGAATGAACTGTGGAAGCTGGACGTGAACCGAATGAAACCTGGACGAGACTATAAAATCGACCTACAGGGCAAGGCTGGCTTTGTGTCTGAGGGCAGCAATAGTGCCAGGGATTGCGCTAGAGCTCCTCTCTTTTCTCATGTCAATGAAAACAAGCTCAAAAGCATTGATACCTACGCCTACTTTATCACTCTGCTGGATAATTATGAGACGTCAACCGGAGTCGCTGAGCAGGTGACAAAAGAGGAGCTTCAGGAGAACAGCCTTTTTCTGGATGCTGTTCTGAAGACCGAGGTCATGAAGTGTGCCCACAGGTATTTAGTAAGCAAAGGTCGCGCCCAATCGGATATGGCTCAGTTTAAGAGGCAGCTCTATGACATCTGGTTCAAGCTCTATCGCAGAGACAAAAGTGGAGCTGAGGATTCCTGTGGATTTGAGCATGTGTTTGTCGGCGAAACCAAGCATGGTAGAGAGATCATGGGCCTCCACAACTGGATCCAGTTTTACAATCTGGAAAAGCAAAATATCGTGGACTACAAAGGATATAAGGCCAGAGATAAAAAGGACACGCCAGATGAGGATGATCACGTCTTAAATCTGCAGTTTAGCTGGAATGGTCTGGTCAAACCGGTGGGAGGCTGTTTCATTGGCGTCAGCCCGGAGTTTGAGGTGGCTCTTTATACCATCATCTTCCTTCTGTCGGGGGAACATATGACCAACGTTAGGGTGAAAGTGGATGAGTATCTGCTGGAGATTGTGGTGTACAGATTCGGGCGCTACATTGGGACATCATATCCCAAATTGATCAGCAGTAACAACCGGGATCTCTAGATCTCCCTTAATGGTCATAATTTAAAACCAAAGTGGCTTGATAATTCTAATAATCACTTCATCATTGCAGCATGTGGTCCTTAAATCCTCAAACTTGAACTGTTAGCGtgaattatatacagtatatggtaGATATATGTGCTTTTAAACTGTCAGCTCACAAATGATGTTGCATTTTCTTATGAATCTACTTTACAATCAAATATTATTATACAGTTATATGCAACTTAAGTGAAACGCGTATTGGTTTGCAATCAGAGCCCTATAGTCGGGTCAAGCCTAAATACcttttttgtgttttgcttttaATCTGTGTAAATATCTTGTTTGCATGAGATGCCCgaatgttttgacaattttttttttaatactctgctaaatcattttatttttttatacacactTTGCAGTAAGTGTAATTGCATACCTACCTATATATCGATAATTGCATATCTAACTGCTGTAAACTTAAATTCTTTTAGtttataaatagttaaaaaatcaTGAGCCTGGGTCTTATGGATAAAAGATATCATTTACACATTTGTTACATATCTGTTCATGGAATTGTGTAGTAGCATGCAAATATTTTTTCCAGATAAACGTCTCATTTTATGATATAAAGCGAATATACACTTTACATTATGTAAGTTTACACCATGTAAGTCCAGTATCTATTAAAACATTGCCactgttacacacatatacatgtgcCTTAAGTTTGTTACAATAAAGAcctttttatttctc
>TCONS_00055446
CACGGTACCCAATCTAAGCCCAGGATTTTGCTCTCATGCAATTAACTTGCATTCTATGAACaaatcaatatattatatttacgCAAGATTTTTAACAGTGAGTAACCTAACAGCAAAcgttgtttttttgtgtgaactgtcccttaaaaATACCTTGCAATTGTTTCAATGTGCTAATTTGTGTCATTCATATGAACGCAATACAGcttgtgtttgtctgtctgtttcaatgttgatgtatttattatatttatattattctaaatagctttttttttccatgtaGATCACAATGaagctgacatggcattaaataaaagataCAATATGATTCCATACAATAAGTGTCATTCATATGCTGAGCATTTATGCTTATTTCTCATACCTGTTTATATTTATCTGCCTCTTGTCTCCAAATGCAGTGAGGATTCCTGTGGATTTGAGCATGTGTTTGTCGGCGAAACCAAGCATGGTAGAGAGATCATGGGCCTCCACAACTGGATCCAGTTTTACAATCTGGAAAAGCAAAATATCGTGGACTACAAAGGATATAAGGCCAGAGATAAAAAGGACACGCCAGATGAGGATGATCACGTCTTAAATCTGCAGTTTAGCTGGAATGGTCTGGTCAAACCGGTGGGAGGCTGTTTCATTGGCGTCAGCCCGGAGTTTGAGGTGGCTCTTTATACCATCATCTTCCTTCTGTCGGGGGAACATATGACCAACGTTAGGGTGAAAGTGGATGAGTATCTGCTGGAGATTGTG
>TCONS_00055447
ACCACAACTTGTCATCATCGCATGACTAAACGTGTTTCTTTGAATTAGAGAAGTGGATTAACCTGCAAATATGGCCAAAGGTCAATGCACCAATCAGGAGCTCTCAAATCTGCTGAATGAACTGTGGAAGCTGGACGTGAACCGAATGAAACCTGGACGAGACTATAAAATCGACCTACAGGGCAAGGCTGGCTTTGTGTCTGAGGGCAGCAATAGTGCCAGGGATTGCGCTAGAGCTCCTCTCTTTTCTCATGTCAATGAAAACAAGCTCAAAAGCATTGATACCTACGCCTACTTTATCACTCTGCTGGATAATTATGAGACGTCAACCGGAGTCGCTGAGCAGGTGACAAAAGAGGAGCTTCAGGAGAACAGCCTTTTTCTGGATGCTGTTCTGAAGACCGAGGTCATGAAGGCTTTGTTTATGCAGTGTGCCCACAGGTATTTAGTAAGCAAAGGTCGCGCCCAATCGGATATGGCTCAGTTTAAGAGGCAGCTCTATGACATCTGGTTCAAGCTCTATCGCAGAGACAAAAGTGGAGCTGAGGATTCCTGTGGATTTGAGCATGTGTTTGTCGGCGAAACCAAGCATGGTAGAGAGATCATGGGCCTCCACAACTGGATCCAGTTTTACAATCTGGAAAAGCAAAATATCGTGGACTACAAAGGATATAAGGCCAGAGATAAAAAGGACACGCCAGATGAGGATGATCACGTCTTAAATCTGCAGTTTAGCTGGAATGGTCTG

Function

symbol description
si:dkey-222f8.3 Predicted to enable endoribonuclease activity. Is expressed in several structures, including EVL; mucus secreting cell; nervous system; periderm; and vasculature.

GO:

id name namespace
GO:0004521 endoribonuclease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3658 Predicted to enable endoribonuclease activity. Is expressed in several structures, including EVL; mucus secreting cell; nervous system; periderm; and vasculature.

Ensembl:

ensembl_id ENSDARG00000058366

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055445 False 1716 mRNA 0.39 7 12033873 12040345
TCONS_00055446 False 765 lncRNA 0.38 2 12034695 12035560
TCONS_00055447 True 748 mRNA 0.46 7 12034833 12040322

Neighbor

gene id symbol gene type direction distance location
XLOC_028582 btbd11a coding downstream 26469 11813778 ~ 12007404 (-)
XLOC_028581 cyb5r3 coding downstream 223074 11804675 ~ 11810799 (-)
XLOC_028580 NA coding downstream 230476 11758282 ~ 11803397 (-)
XLOC_028579 NA coding downstream 275831 11754996 ~ 11758042 (-)
XLOC_028578 NA coding downstream 279017 11753630 ~ 11754856 (-)
XLOC_028584 NA coding upstream 15590 12055935 ~ 12056427 (-)
XLOC_028585 NA coding upstream 17463 12057808 ~ 12058631 (-)
XLOC_028586 NA coding upstream 19639 12059984 ~ 12061389 (-)
XLOC_028587 braf coding upstream 34431 12074776 ~ 12102036 (-)
XLOC_028588 mrps33 coding upstream 61922 12102267 ~ 12106039 (-)
XLOC_028576 BX465862.4 non-coding downstream 341674 11610718 ~ 11692199 (-)
XLOC_028575 dre-mir-29b-2 non-coding downstream 425590 11608196 ~ 11608283 (-)
XLOC_028589 CR792454.1 non-coding upstream 82449 12122794 ~ 12224825 (-)
XLOC_028590 NA non-coding upstream 189681 12230026 ~ 12238811 (-)

Expression


Co-expression Network