G942080


Basic Information

Item Value
gene id G942080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10568876 ~ 10569085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1074421
aataaccttaTTTTTGTTGTAATTATCTTTTTATTAGAATGTTTTCTTTTAACAGGGGTTACATAGACTACCAAAAAAAAGTGCACCACACAGACTAAGTCCAATTAAAGGAATAAGGATACAGCAAAACATTATACAAAAAGGCAGTCATTAAAGAAAAACATCACAATTATAATATGGGTCATTTATGGGAGGTTTTCTACATAGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1074421 True 210 lncRNA 0.30 1 10568876 10569085

Neighbor

gene id symbol gene type direction distance location
LOC110535248 LOC106579638 coding upstream 201197 10305885 ~ 10367679 (+)
LOC118937312 NA coding upstream 299457 10267264 ~ 10269419 (+)
LOC110535246 tm14c coding upstream 393348 10171849 ~ 10175528 (+)
LOC118937311 LOC106579630 coding upstream 1156599 9410878 ~ 9412277 (+)
LOC110535239 LOC106579629 coding upstream 1163005 9357029 ~ 9405871 (+)
LOC110535252 LOC106579643 coding downstream 62279 10631364 ~ 10639422 (+)
vapa vapa coding downstream 97122 10666207 ~ 10671992 (+)
LOC110535262 LOC106579655 coding downstream 456552 11025637 ~ 11064599 (+)
LOC110535263 lrrc30 coding downstream 586595 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 609247 11178332 ~ 11497838 (+)
G942077 NA non-coding upstream 6506 10562140 ~ 10562370 (+)
G942053 NA non-coding upstream 51791 10510033 ~ 10517085 (+)
G942051 NA non-coding upstream 61281 10507185 ~ 10507595 (+)
G942048 NA non-coding upstream 64259 10504401 ~ 10504617 (+)
G942041 NA non-coding upstream 71661 10496948 ~ 10497215 (+)
G942084 NA non-coding downstream 12413 10581498 ~ 10582028 (+)
G942086 NA non-coding downstream 13979 10583064 ~ 10583350 (+)
G942087 NA non-coding downstream 18692 10587777 ~ 10588007 (+)
G942092 NA non-coding downstream 33471 10602556 ~ 10602799 (+)
G942093 NA non-coding downstream 35817 10604902 ~ 10605107 (+)
G941893 NA other upstream 323370 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 1713439 8845565 ~ 8855476 (+)
G940376 NA other upstream 1916355 8651504 ~ 8652993 (+)
G940313 NA other upstream 2028009 8532540 ~ 8540867 (+)
G940247 NA other upstream 2129101 8439480 ~ 8439775 (+)
G942702 NA other downstream 541641 11110726 ~ 11111336 (+)
G944957 NA other downstream 2818465 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3495463 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3586269 14154784 ~ 14202999 (+)
G946644 NA other downstream 3741490 14310575 ~ 14314318 (+)

Expression


Co-expression Network