Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_028586 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007115.7 |
| NCBI id | CM002888.2 |
| chromosome length | 78093715 |
| location | 12059984 ~ 12061389 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0019222 | regulation of metabolic process | biological_process |
| GO:0006342 | chromatin silencing | biological_process |
| GO:0018130 | heterocycle biosynthetic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0048519 | negative regulation of biological process | biological_process |
| GO:0045814 | negative regulation of gene expression, epigenetic | biological_process |
| GO:0031323 | regulation of cellular metabolic process | biological_process |
| GO:1903506 | regulation of nucleic acid-templated transcription | biological_process |
| GO:1901362 | organic cyclic compound biosynthetic process | biological_process |
| GO:0050789 | regulation of biological process | biological_process |
| GO:0050794 | regulation of cellular process | biological_process |
| GO:2001141 | regulation of RNA biosynthetic process | biological_process |
| GO:0019438 | aromatic compound biosynthetic process | biological_process |
| GO:0034654 | nucleobase-containing compound biosynthetic process | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0044815 | DNA packaging complex | cellular_component |
| GO:0032993 | protein-DNA complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00058119 | False | 1406 | lncRNA | 0.28 | 1 | 12059984 | 12061389 |
| TCONS_00057330 | True | 267 | lncRNA | 0.34 | 2 | 12060193 | 12060718 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_028585 | NA | coding | downstream | 1353 | 12057808 ~ 12058631 (-) |
| XLOC_028584 | NA | coding | downstream | 3557 | 12055935 ~ 12056427 (-) |
| XLOC_028583 | si:dkey-222f8.3 | coding | downstream | 19639 | 12033873 ~ 12040345 (-) |
| XLOC_028582 | btbd11a | coding | downstream | 52580 | 11813778 ~ 12007404 (-) |
| XLOC_028581 | cyb5r3 | coding | downstream | 249185 | 11804675 ~ 11810799 (-) |
| XLOC_028587 | braf | coding | upstream | 13387 | 12074776 ~ 12102036 (-) |
| XLOC_028588 | mrps33 | coding | upstream | 40878 | 12102267 ~ 12106039 (-) |
| XLOC_028589 | CR792454.1 | coding | upstream | 61405 | 12122794 ~ 12224825 (-) |
| XLOC_028590 | NA | coding | upstream | 168637 | 12230026 ~ 12238811 (-) |
| XLOC_028591 | NA | coding | upstream | 178745 | 12240134 ~ 12241573 (-) |
| XLOC_028580 | NA | non-coding | downstream | 256587 | 11758282 ~ 11803397 (-) |
| XLOC_028579 | NA | non-coding | downstream | 301942 | 11754996 ~ 11758042 (-) |
| XLOC_028578 | NA | non-coding | downstream | 305128 | 11753630 ~ 11754856 (-) |
| XLOC_028593 | NA | non-coding | upstream | 227376 | 12288765 ~ 12297450 (-) |
| XLOC_028597 | AL844512.1 | non-coding | upstream | 534291 | 12595680 ~ 12595804 (-) |
