G942541


Basic Information

Item Value
gene id G942541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10834449 ~ 10834721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1074969
aatcataccttgattacaaattatgtcataaaggaaaacgtcccttgtggaacagatatgacagctggttacacaaaagaaaaggggctgggtttgagtgaaagagtgggaagactgaggaacaaaatgcgaagctgtgctatcgtaaatacagtatcttatgcattctaaattaccgcccatttggaaaaggaaaatgcaatacatatttactctgagctgcgcttcggtaggttggtggtagatggaaggccgtgttgcccaaccaagtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1074969 True 273 lncRNA 0.42 1 10834449 10834721

Neighbor

gene id symbol gene type direction distance location
vapa vapa coding upstream 162457 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 195027 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 210429 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 466770 10305885 ~ 10367679 (+)
LOC118937312 NA coding upstream 565030 10267264 ~ 10269419 (+)
LOC110535262 LOC106579655 coding downstream 190916 11025637 ~ 11064599 (+)
LOC110535263 lrrc30 coding downstream 320959 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 343611 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 500789 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 665251 11499972 ~ 11541498 (+)
G942141 NA non-coding upstream 101364 10730729 ~ 10733085 (+)
G942146 NA non-coding upstream 118817 10715001 ~ 10715632 (+)
G942140 NA non-coding upstream 120697 10709833 ~ 10713752 (+)
G942138 NA non-coding upstream 127551 10706585 ~ 10706898 (+)
G942134 LOC106579648 non-coding upstream 130022 10697698 ~ 10704427 (+)
G942543 NA non-coding downstream 320 10835041 ~ 10837927 (+)
G942547 NA non-coding downstream 19859 10854580 ~ 10854782 (+)
G942540 NA non-coding downstream 38231 10872952 ~ 10873755 (+)
G942570 NA non-coding downstream 62312 10897033 ~ 10897998 (+)
G942677 LOC106579654 non-coding downstream 242467 11077188 ~ 11077489 (+)
G941893 NA other upstream 588943 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 1979012 8845565 ~ 8855476 (+)
G940376 NA other upstream 2181928 8651504 ~ 8652993 (+)
G940313 NA other upstream 2293582 8532540 ~ 8540867 (+)
G940247 NA other upstream 2394674 8439480 ~ 8439775 (+)
G942702 NA other downstream 276005 11110726 ~ 11111336 (+)
G944957 NA other downstream 2552829 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3229827 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3320633 14154784 ~ 14202999 (+)
G946644 NA other downstream 3475854 14310575 ~ 14314318 (+)

Expression


Co-expression Network