XLOC_028589 (CR792454.1)


Basic Information

Item Value
gene id XLOC_028589
gene name CR792454.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12122794 ~ 12224825 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055453
GGAAAATTCAATGGCAGCCAGGCAATACAAGAAGACTTCGAGTTTAGATTGAACTCACCGCCCATAAGGAAGAGCAGTCCTGCCACATACTGCATGAGGCCGCGGTCCCAGCAGCATCCCAGCATCCCGATGATCCAGCCGAAGAGAATGATGGCCACCGCCATTCCCATAAACCCTGCCGTCATCCTCCGCAGATCTGAAATCAACACATGTAAACCATTCAGAGATGATGAGGACACAAGAAACATCCACTACTGTGGAGCATTACTACTGCTATTTCCTCAGCTGCCTCCAGCCGTCCTCCTCCACTTCCCTACGTGGCAAAACCCCCCACGCCTCCGCTTTGTTCACCTGATTGTGTGCGCAAACCTGTGCCAGGCTTCACCAGGGAGAACAGAAAGACAAACAGCGAGGTGAACAATGAGTCCAGGCCGCAAACATTGGCCGCTGTGGTGAATGGCAACATTTATCAGTCTTGTGGAAACACTGAAGACGGCTGAATGTTGTTATGAGCAGGCCTTGTGCTTTCTAGCATTCAGGGAAATTATAACAGGCCTGCAGCAGCGACAGGAaaataattacacattttaattaGGAAGAAGTATACCGGTGGCTTATTTTCAGAGTGATTTCCAGGGACTGCAGAGTTAGAGGAAATGGCTGAAATGGCATTGACGACTGTTTTTAGTAACATAATGGCACATTTCAAGGTTTCATGTAACATTAGAGTTGTTGGGTTGAGAAAAGTGTGCTGTTTGGAAGGTAAAGGGTTAAAAAAGGGTTTAATTTACTGAAATATGCACATTGATGAGTTGTGcatgataaataaatgtttagagtTAGACTCAAATGCCGTATAATTCATAAATGTGACATTTTAGTTGATGAAAGGGCAGATTTTCAATAAAATCATTTAGTCGCAGACAGTTTTAGT
>TCONS_00055454
CAGGCATGGGAAAAGACTCGTCTGGcagtctaaaataaataataaaatgcctAAAATGTATTAGCTGTATAAGTTACAGGAGTTTATAAGACTAATAATACCAAATACATTAAGTTTTTCAATCTTACCCAAAACAAATACTCATATAGTTCTAATAACACCTCAGGAAAATTCAATGGCAGCCAGGCAATACAAGAAGACTTCGAGTTTAGATTGAACTCACCGCCCATAAGGAAGAGCAGTCCTGCCACATACTGCATGAGGCCGCGGTCCCAGCAGCATCCCAGCATCCCGATGATCCAGCCGAAGAGAATGATGGCCACCGCCATTCCCATAAACCCTGCCGTCATCCTCCGCAGATCTGAAATCAACACATGTAAACCATTCAGAGATGATGAGGACACAAGAAACATCCACTACTCTCTGCTCTCATACGTCTCCATGCTGGATCGAGGAGAGCCAGAGAAAGATGGAGACTGTTCGGATACCGCAGGGTTTGGGGTTACAGGAGAGTGTCTTCCGTCACCTGACAGA
>TCONS_00055455
TGTGCATCAAAGAACAGGCATGGGAAAAGACTCGTCTGGcagtctaaaataaataataaaatgcctAAAATGTATTAGCTGTATAAGTTACAGGAGTTTATAAGACTAATAATACCAAATACATTAAGTTTTTCAATCTTACCCAAAACAAATACTCATATAGTTCTAATAACACCTCAGGAAAATTCAATGGCAGCCAGGCAATACAAGAAGACTTCGAGATTGAACTCACCGCCCATAAGGAAGAGCAGTCCTGCCACATACTGCATGAGGCCGCGGTCCCAGCAGCATCCCAGCATCCCGATGATCCAGCCGAAGAGAATGATGGCCACCGCCATTCCCATAAACCCTGCCGTCATCCTCCGCAGATCTGAAATCAACACATGTAAACCATTCAGAGATGATGAGGACACAAGAAACATCCACTACTgCATCTCATTTGCTTGTTTGCTGGGCTGCATTGTGGATTAAGTattaaatatgacaaataaat
>TCONS_00058120
GAAGCATCTGAACTGTGTGCATCAAAGAACAGGCATGGGAAAAGACTCGTCTGGcagtctaaaataaataataaaatgcctAAAATGTATTAGCTGTATAAGTTACAGGAGTTTATAAGACTAATAATACCAAATACATTAAGTTTTTCAATCTTACCCAAAACAAATACTCATATAGTTCTAATAACACCTCAGGAAAATTCAATGGCAGCCAGGCAATACAAGAAGACTTCGAGATTGAACTCACCGCCCATAAGGAAGAGCAGTCCTGCCACATACTGCATGAGGCCGCGGTCCCAGCAGCATCCCAGCATCCCGATGATCCAGCCGAAGAGAATGATGGCCACCGCCATTCCCATAAACCCTGCCGTCATCCTCCGCAGATCTGAAATCAACACATGTAAACCATTCAGAGATGATGAGGACACAAGAAACATCCACTACTGCGTCCTGAAGCTGTTTACCTCACAGTCCACGGAGAGCTCAGTTATGACCCTTAGATATGGTTTACTACAGTAACGCCACAATAAAACAGAGCGAAGCCTTCACAACACTGGAACACTTGGTGTAGTGATAAATTGATCCTCTACTTACAGAGAATGATGGAATATGACTTGGCTATCAAACATACTGGTTTCACAAGAGTGTTAGCCTTTTTAAACATGAGTCTGGATGCAAACGCTTCAC

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055453 False 934 lncRNA 0.44 3 12122794 12224631
TCONS_00055454 False 534 lncRNA 0.45 3 12170039 12224796
TCONS_00055455 False 493 lncRNA 0.41 3 12217519 12224810
TCONS_00058120 True 687 lncRNA 0.42 3 12221159 12224825

Neighbor

gene id symbol gene type direction distance location
XLOC_028588 mrps33 coding downstream 16755 12102267 ~ 12106039 (-)
XLOC_028587 braf coding downstream 20758 12074776 ~ 12102036 (-)
XLOC_028586 NA coding downstream 61405 12059984 ~ 12061389 (-)
XLOC_028585 NA coding downstream 64163 12057808 ~ 12058631 (-)
XLOC_028584 NA coding downstream 66367 12055935 ~ 12056427 (-)
XLOC_028590 NA coding upstream 5201 12230026 ~ 12238811 (-)
XLOC_028591 NA coding upstream 15309 12240134 ~ 12241573 (-)
XLOC_028592 cnot4b coding upstream 18873 12243698 ~ 12286067 (-)
XLOC_028593 NA coding upstream 63940 12288765 ~ 12297450 (-)
XLOC_028594 il17ra1a coding upstream 92636 12317461 ~ 12323228 (-)
XLOC_028580 NA non-coding downstream 319397 11758282 ~ 11803397 (-)
XLOC_028579 NA non-coding downstream 364752 11754996 ~ 11758042 (-)
XLOC_028597 AL844512.1 non-coding upstream 370855 12595680 ~ 12595804 (-)
XLOC_028600 NA non-coding upstream 516537 12741362 ~ 12744353 (-)

Expression


Co-expression Network