G942547


Basic Information

Item Value
gene id G942547
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10854580 ~ 10854782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1074979
agaaaaatctgtatgcagtgtgtgcaaatgaagtaaggaggtaaggccatagtggcaaagtaattacaatttagcaattaacactggagtgatagatctgcagatgaggatgtgcaagtagaaatactggtgtgcaaaagagcagaaaaacaaatatggggatgatgaAGATAGTTGGTTGGATGAGCTTTTTaaagatgggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1074979 True 203 lncRNA 0.38 1 10854580 10854782

Neighbor

gene id symbol gene type direction distance location
vapa vapa coding upstream 182588 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 215158 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 230560 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 486901 10305885 ~ 10367679 (+)
LOC118937312 NA coding upstream 585161 10267264 ~ 10269419 (+)
LOC110535262 LOC106579655 coding downstream 170855 11025637 ~ 11064599 (+)
LOC110535263 lrrc30 coding downstream 300898 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 323550 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 480728 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 645190 11499972 ~ 11541498 (+)
G942543 NA non-coding upstream 16653 10835041 ~ 10837927 (+)
G942541 NA non-coding upstream 19859 10834449 ~ 10834721 (+)
G942141 NA non-coding upstream 121495 10730729 ~ 10733085 (+)
G942146 NA non-coding upstream 138948 10715001 ~ 10715632 (+)
G942140 NA non-coding upstream 140828 10709833 ~ 10713752 (+)
G942540 NA non-coding downstream 18170 10872952 ~ 10873755 (+)
G942570 NA non-coding downstream 42251 10897033 ~ 10897998 (+)
G942677 LOC106579654 non-coding downstream 222406 11077188 ~ 11077489 (+)
G942678 LOC106579654 non-coding downstream 223082 11077864 ~ 11078117 (+)
G942682 NA non-coding downstream 227371 11082153 ~ 11083258 (+)
G941893 NA other upstream 609074 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 1999143 8845565 ~ 8855476 (+)
G940376 NA other upstream 2202059 8651504 ~ 8652993 (+)
G940313 NA other upstream 2313713 8532540 ~ 8540867 (+)
G940247 NA other upstream 2414805 8439480 ~ 8439775 (+)
G942702 NA other downstream 255944 11110726 ~ 11111336 (+)
G944957 NA other downstream 2532768 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3209766 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3300572 14154784 ~ 14202999 (+)
G946644 NA other downstream 3455793 14310575 ~ 14314318 (+)

Expression


Co-expression Network