G942570


Basic Information

Item Value
gene id G942570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 10897033 ~ 10897998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075002
cacaggaggaggcaggtagctgggtccaggggcaggtagaagGTCAttcacaggaggaggcaggtagctgggtccaggggcaggcagaaggtcatacacaggaagaggcaggtagctgggtccaggggcaggtagaaggtcatacacaggaggaggcaggtagctgggtccaggggcaggcagaaggtcatacacaggaggaggcaggtagctgggtccaggggcaggtagaaggtcatacacaggaggaggcaggtagctgggtccaggggcaggtagaaggtcatacacagg

Function

NR:

description
plakophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075002 True 294 lncRNA 0.61 2 10897033 10897998

Neighbor

gene id symbol gene type direction distance location
vapa vapa coding upstream 225041 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 257611 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 273013 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 529354 10305885 ~ 10367679 (+)
LOC118937312 NA coding upstream 627614 10267264 ~ 10269419 (+)
LOC110535262 LOC106579655 coding downstream 127639 11025637 ~ 11064599 (+)
LOC110535263 lrrc30 coding downstream 257682 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 280334 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 437512 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 601974 11499972 ~ 11541498 (+)
G942540 NA non-coding upstream 23278 10872952 ~ 10873755 (+)
G942547 NA non-coding upstream 42251 10854580 ~ 10854782 (+)
G942543 NA non-coding upstream 59106 10835041 ~ 10837927 (+)
G942541 NA non-coding upstream 62312 10834449 ~ 10834721 (+)
G942141 NA non-coding upstream 163948 10730729 ~ 10733085 (+)
G942677 LOC106579654 non-coding downstream 179190 11077188 ~ 11077489 (+)
G942678 LOC106579654 non-coding downstream 179866 11077864 ~ 11078117 (+)
G942682 NA non-coding downstream 184155 11082153 ~ 11083258 (+)
G942683 NA non-coding downstream 185504 11083502 ~ 11083796 (+)
G942686 NA non-coding downstream 187451 11085449 ~ 11085659 (+)
G941893 NA other upstream 651527 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2041596 8845565 ~ 8855476 (+)
G940376 NA other upstream 2244512 8651504 ~ 8652993 (+)
G940313 NA other upstream 2356166 8532540 ~ 8540867 (+)
G940247 NA other upstream 2457258 8439480 ~ 8439775 (+)
G942702 NA other downstream 212728 11110726 ~ 11111336 (+)
G944957 NA other downstream 2489552 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 3166550 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3257356 14154784 ~ 14202999 (+)
G946644 NA other downstream 3412577 14310575 ~ 14314318 (+)

Expression


Co-expression Network