G942677 (LOC106579654)


Basic Information

Item Value
gene id G942677
gene name LOC106579654
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11077188 ~ 11077489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075118
GTGGCATTGGAGGCCAGGTAGAGCAGCAGGCCGTTGGGGGAGAGGGTCTTGAACAGCATGAcgatggaggtggaggtggagcgGAGGGGTTTCTCTACAACCGAGTAGCCACTGCCATCAAAGTGGAAGGACGTCTCCTCCGTCTGCGGACTCATGAAGCAGCCGCGACACTGGCCCTCCCTCTCGGCGTAGTTCCACAGCCCGATGTTCTTCTCGTTGAGCGACGCCTCCCCCATACAGCCCTTGAACTGGGTCATCTTCACTGCGGAGGACTTCTGTGTAAAAGAGATTGAATAAATGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075118 True 302 lncRNA 0.57 1 11077188 11077489

Neighbor

gene id symbol gene type direction distance location
LOC110535262 LOC106579655 coding upstream 12589 11025637 ~ 11064599 (+)
vapa vapa coding upstream 405196 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 437766 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 453168 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 709509 10305885 ~ 10367679 (+)
LOC110535263 lrrc30 coding downstream 78191 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 100843 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 258021 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 422483 11499972 ~ 11541498 (+)
LOC110535272 LOC106579661 coding downstream 467968 11545457 ~ 11548240 (+)
G942570 NA non-coding upstream 179190 10897033 ~ 10897998 (+)
G942540 NA non-coding upstream 203433 10872952 ~ 10873755 (+)
G942547 NA non-coding upstream 222406 10854580 ~ 10854782 (+)
G942543 NA non-coding upstream 239261 10835041 ~ 10837927 (+)
G942541 NA non-coding upstream 242467 10834449 ~ 10834721 (+)
G942678 LOC106579654 non-coding downstream 375 11077864 ~ 11078117 (+)
G942682 NA non-coding downstream 4664 11082153 ~ 11083258 (+)
G942683 NA non-coding downstream 6013 11083502 ~ 11083796 (+)
G942686 NA non-coding downstream 7960 11085449 ~ 11085659 (+)
G942687 NA non-coding downstream 8559 11086048 ~ 11086475 (+)
G941893 NA other upstream 831682 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2221751 8845565 ~ 8855476 (+)
G940376 NA other upstream 2424667 8651504 ~ 8652993 (+)
G940313 NA other upstream 2536321 8532540 ~ 8540867 (+)
G940247 NA other upstream 2637413 8439480 ~ 8439775 (+)
G942702 NA other downstream 33237 11110726 ~ 11111336 (+)
G944957 NA other downstream 2310061 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2987059 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3077865 14154784 ~ 14202999 (+)
G946644 NA other downstream 3233086 14310575 ~ 14314318 (+)

Expression


Co-expression Network