G942678 (LOC106579654)


Basic Information

Item Value
gene id G942678
gene name LOC106579654
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11077864 ~ 11078117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075119
TCCCAGGCCACCAACAAATATGAGGGTAAACTTGTTGACATCCAGGATCGTAGCAGAGCGTGGTGAGGTGGTCTTGACCGCGGGCAGGGGGTCTGACTCCAGCTGGTGGACTGACAGCGTGCCGTGCTTCCCAAAGCGTGTGGCGTTGATGCGATGCCACTTATTGTTGTTGATCTGGATGTCGGGGTACTCCAGTTTGGCGTGGCCTGAACCCGCATCCCACAAGAACCCCACCTTGCCACGATGCATCTCCA

Function

NR:

description
laminin subunit alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075119 True 254 lncRNA 0.57 1 11077864 11078117

Neighbor

gene id symbol gene type direction distance location
LOC110535262 LOC106579655 coding upstream 13265 11025637 ~ 11064599 (+)
vapa vapa coding upstream 405872 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 438442 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 453844 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 710185 10305885 ~ 10367679 (+)
LOC110535263 lrrc30 coding downstream 77563 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 100215 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 257393 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 421855 11499972 ~ 11541498 (+)
LOC110535272 LOC106579661 coding downstream 467340 11545457 ~ 11548240 (+)
G942677 LOC106579654 non-coding upstream 375 11077188 ~ 11077489 (+)
G942570 NA non-coding upstream 179866 10897033 ~ 10897998 (+)
G942540 NA non-coding upstream 204109 10872952 ~ 10873755 (+)
G942547 NA non-coding upstream 223082 10854580 ~ 10854782 (+)
G942543 NA non-coding upstream 239937 10835041 ~ 10837927 (+)
G942682 NA non-coding downstream 4036 11082153 ~ 11083258 (+)
G942683 NA non-coding downstream 5385 11083502 ~ 11083796 (+)
G942686 NA non-coding downstream 7332 11085449 ~ 11085659 (+)
G942687 NA non-coding downstream 7931 11086048 ~ 11086475 (+)
G942688 NA non-coding downstream 9873 11087990 ~ 11088257 (+)
G941893 NA other upstream 832358 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2222427 8845565 ~ 8855476 (+)
G940376 NA other upstream 2425343 8651504 ~ 8652993 (+)
G940313 NA other upstream 2536997 8532540 ~ 8540867 (+)
G940247 NA other upstream 2638089 8439480 ~ 8439775 (+)
G942702 NA other downstream 32609 11110726 ~ 11111336 (+)
G944957 NA other downstream 2309433 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2986431 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3077237 14154784 ~ 14202999 (+)
G946644 NA other downstream 3232458 14310575 ~ 14314318 (+)

Expression


Co-expression Network