G942682


Basic Information

Item Value
gene id G942682
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11082153 ~ 11083258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075123
GGTTAGTTGGGTACAAGACGAATgggtagactgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtcctccAACTCACCCCCAGTGCTGTTGTTCAGGGCCAGACACTCAGCCAGTATCTTAGCACTACACTGCACAGCCTCAGATCCCAGATCAGTAAGTGACACCTCTTGCTGGGCCGtctacagtCATGTTGAGGGCCATAGCAGCAGTCAGGATGGCTCGGTTAGCCATCTCCTCTGCAGGCTGGATGTTAACTCTGATGTTAGAGTTGGCATGCGCAGCACTGGTGGCTTTCAGAGTGGTATTCATCACCTCCGC

Function

NR:

description
laminin subunit alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075123 True 336 lncRNA 0.53 2 11082153 11083258

Neighbor

gene id symbol gene type direction distance location
LOC110535262 LOC106579655 coding upstream 17554 11025637 ~ 11064599 (+)
vapa vapa coding upstream 410161 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 442731 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 458133 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 714474 10305885 ~ 10367679 (+)
LOC110535263 lrrc30 coding downstream 72422 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 95074 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 252252 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 416714 11499972 ~ 11541498 (+)
LOC110535272 LOC106579661 coding downstream 462199 11545457 ~ 11548240 (+)
G942678 LOC106579654 non-coding upstream 4036 11077864 ~ 11078117 (+)
G942677 LOC106579654 non-coding upstream 4664 11077188 ~ 11077489 (+)
G942570 NA non-coding upstream 184155 10897033 ~ 10897998 (+)
G942540 NA non-coding upstream 208398 10872952 ~ 10873755 (+)
G942547 NA non-coding upstream 227371 10854580 ~ 10854782 (+)
G942683 NA non-coding downstream 244 11083502 ~ 11083796 (+)
G942686 NA non-coding downstream 2191 11085449 ~ 11085659 (+)
G942687 NA non-coding downstream 2790 11086048 ~ 11086475 (+)
G942688 NA non-coding downstream 4732 11087990 ~ 11088257 (+)
G942691 NA non-coding downstream 8611 11091869 ~ 11092085 (+)
G941893 NA other upstream 836647 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2226716 8845565 ~ 8855476 (+)
G940376 NA other upstream 2429632 8651504 ~ 8652993 (+)
G940313 NA other upstream 2541286 8532540 ~ 8540867 (+)
G940247 NA other upstream 2642378 8439480 ~ 8439775 (+)
G942702 NA other downstream 27468 11110726 ~ 11111336 (+)
G944957 NA other downstream 2304292 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2981290 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3072096 14154784 ~ 14202999 (+)
G946644 NA other downstream 3227317 14310575 ~ 14314318 (+)

Expression


Co-expression Network