XLOC_028590


Basic Information

Item Value
gene id XLOC_028590
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12230026 ~ 12238811 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058121
TGGCTGTGATGCAAACACATTTGcatgaatataataagaaaacCCACAATCCGGCACCCATTCATCACCAAACACACTTATGAGGACGGTCTTTAAAATGCCCTGCTCTGACAGTTAGTTTGTATTCATTACCGCAGTTTTCCAGAAATGTTCCCCTTATAAGCACCTCAATGATCCATACGACGCTTATGAGATGCCGCTACCTGCTCTCTTTCCGAGACTCAGTCTAGGACGGATGCCAATTAAACCATAATTGAAAGTGTTTATTCTTGGCGTGTGAAGTGAACATCTGCCCTTCGGTGCTCTTTGATGTCTTCATCCTCCGTGATTGAACACCCCTCGATGCTTCGCGAAAGAAAGGGAAGGAGGAATGAAATGTAATTCTCCGGCAGGGCCGTGCGCGTATTGGTTTTGTTTGAGAGTCTACAACCAGCGGCTGACCCCATTTATGCCTCCGCCTGGGAGCGTAATCCGTGgactgaaataaatattttcctcCAAAGTGTGTCAAGGAACACTATCTTATATAAGACCAGATGGGTTTGTTGCAAGACGCCTGTGAAAAACCAGATtgttattgtgtacttatgcacATTTTATGGAGGGTTTTTTCTGCGTTTGGTCGATTTGTCTTCGGGCTGTGCTTCTGGGAAGTGtaaagattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggctggGTGTTTATGTAATTTCATGGCCAATTGCATTGTCAGCATGCAACAAAGTCTTTTCACTTGAACGCCGGCTCACAAATCGCACATAAATATGGCAGAAAGCTCCTCTGAATGCTCTCCATGAACTCGCTTCATCAAAGTGGAGTGAAAATTTGATGGCCAAAGACCCCCATGAAATGGAAGTTGGGCTGggattttcagttttagtttgtGACAGCTTTGTGAAACCTCGCCTGGCAGCTTGTGTCACGCATGAATGCAGTGGAAACTCTAGAGTCCAGCTGTTTCTTTCATAACCACTTTATGGTTGTCAAGGTAAGCCTGAACGTTAATGCAAACTGTGATGCTGAGTTGCTTGTGTTTGATAACTAATTAAGTTCTTTATGATGATTAGCAGCTTCCAATGCTCTATTTGAATGTTGGCGATCTGTTGGCAGAATTGAACACCTTTCTTCTACAAGCATGAATAGATGAGACGCTCTTTTTTTGGTGTCCAGGGCATGTAGAGCGCGGGATGGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058121 True 1237 lncRNA 0.44 2 12230026 12238811

Neighbor

gene id symbol gene type direction distance location
XLOC_028589 CR792454.1 coding downstream 5201 12122794 ~ 12224825 (-)
XLOC_028588 mrps33 coding downstream 123987 12102267 ~ 12106039 (-)
XLOC_028587 braf coding downstream 127990 12074776 ~ 12102036 (-)
XLOC_028586 NA coding downstream 168637 12059984 ~ 12061389 (-)
XLOC_028585 NA coding downstream 171395 12057808 ~ 12058631 (-)
XLOC_028591 NA coding upstream 1323 12240134 ~ 12241573 (-)
XLOC_028592 cnot4b coding upstream 4887 12243698 ~ 12286067 (-)
XLOC_028593 NA coding upstream 49954 12288765 ~ 12297450 (-)
XLOC_028594 il17ra1a coding upstream 78650 12317461 ~ 12323228 (-)
XLOC_028595 rergla coding upstream 142924 12381735 ~ 12388535 (-)
XLOC_028584 NA non-coding downstream 173599 12055935 ~ 12056427 (-)
XLOC_028580 NA non-coding downstream 426629 11758282 ~ 11803397 (-)
XLOC_028597 AL844512.1 non-coding upstream 356869 12595680 ~ 12595804 (-)
XLOC_028600 NA non-coding upstream 502551 12741362 ~ 12744353 (-)
XLOC_028605 BX119963.4 non-coding upstream 635171 12873982 ~ 12883327 (-)

Expression


Co-expression Network