G942688


Basic Information

Item Value
gene id G942688
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11087990 ~ 11088257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075130
ggaaGGGTCTGTATatcttccgaatgcactgtctgtctgtccaagcCCTGCACAAATCAAAGAGTAGGATACTCACAGACACACTGGTCCCCGTCCAGGACGTGTCTCGCCTCGCACTGGTCACACAGGCGTCCCCTGACCCCGGCTTTACATTCACACTGGCCCGTCAGAGAGTCACACGCTGGATGGAGAGAACCTGCAGTACTACACAGACACTCTTCACACTTCCCTCCTGGACCAGACGGGTTCCCATAGTAACCCACTGAAC

Function

NR:

description
laminin subunit alpha-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075130 True 268 lncRNA 0.55 1 11087990 11088257

Neighbor

gene id symbol gene type direction distance location
LOC110535262 LOC106579655 coding upstream 23391 11025637 ~ 11064599 (+)
vapa vapa coding upstream 415998 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 448568 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 463970 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 720311 10305885 ~ 10367679 (+)
LOC110535263 lrrc30 coding downstream 67423 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 90075 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 247253 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 411715 11499972 ~ 11541498 (+)
LOC110535272 LOC106579661 coding downstream 457200 11545457 ~ 11548240 (+)
G942687 NA non-coding upstream 1515 11086048 ~ 11086475 (+)
G942686 NA non-coding upstream 2331 11085449 ~ 11085659 (+)
G942683 NA non-coding upstream 4194 11083502 ~ 11083796 (+)
G942682 NA non-coding upstream 4732 11082153 ~ 11083258 (+)
G942678 LOC106579654 non-coding upstream 9873 11077864 ~ 11078117 (+)
G942691 NA non-coding downstream 3612 11091869 ~ 11092085 (+)
G942693 LOC106579654 non-coding downstream 5387 11093644 ~ 11097238 (+)
G942719 NA non-coding downstream 46883 11135140 ~ 11135378 (+)
G942722 NA non-coding downstream 54636 11142893 ~ 11143135 (+)
G942915 LOC100136012 non-coding downstream 72221 11160478 ~ 11160744 (+)
G941893 NA other upstream 842484 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2232553 8845565 ~ 8855476 (+)
G940376 NA other upstream 2435469 8651504 ~ 8652993 (+)
G940313 NA other upstream 2547123 8532540 ~ 8540867 (+)
G940247 NA other upstream 2648215 8439480 ~ 8439775 (+)
G942702 NA other downstream 22469 11110726 ~ 11111336 (+)
G944957 NA other downstream 2299293 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2976291 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3067097 14154784 ~ 14202999 (+)
G946644 NA other downstream 3222318 14310575 ~ 14314318 (+)

Expression


Co-expression Network