G942693 (LOC106579654)


Basic Information

Item Value
gene id G942693
gene name LOC106579654
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11093644 ~ 11097238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075135
CTTGTTTCCCTGGTAGTGTTTAGGCAGCCTCCAGTAGTAGGGTCCAGCCAGGCTGGGGGTCTCTCCTTGCACACACAGTTCCCTGGGGCCTCACAGCTGCACACGCCCAGTGCCTCATCACAGAACTCCTCTCTGGTGCCGTTTATGTTGCAGTTGCACACCGTGCATTCTGGGTAGCCCCTGTAGCCCATGGCACAGCGGTCACAGTTCTGCCCAGCGAAATCAGAGCGGCACTGGCACTGCCCGTTGGTGATGCCACACTCGGTGGCATAGCTGCCCATCTCACTGCAGTTACATGACT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075135 True 301 lncRNA 0.58 2 11093644 11097238

Neighbor

gene id symbol gene type direction distance location
LOC110535262 LOC106579655 coding upstream 29045 11025637 ~ 11064599 (+)
vapa vapa coding upstream 421652 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 454222 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 469624 10395438 ~ 10624020 (+)
LOC110535248 LOC106579638 coding upstream 725965 10305885 ~ 10367679 (+)
LOC110535263 lrrc30 coding downstream 58442 11155680 ~ 11158395 (+)
LOC110535264 LOC106579657 coding downstream 81094 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 238272 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 402734 11499972 ~ 11541498 (+)
LOC110535272 LOC106579661 coding downstream 448219 11545457 ~ 11548240 (+)
G942691 NA non-coding upstream 1559 11091869 ~ 11092085 (+)
G942688 NA non-coding upstream 5387 11087990 ~ 11088257 (+)
G942687 NA non-coding upstream 7169 11086048 ~ 11086475 (+)
G942686 NA non-coding upstream 7985 11085449 ~ 11085659 (+)
G942683 NA non-coding upstream 9848 11083502 ~ 11083796 (+)
G942719 NA non-coding downstream 37902 11135140 ~ 11135378 (+)
G942722 NA non-coding downstream 45655 11142893 ~ 11143135 (+)
G942915 LOC100136012 non-coding downstream 63240 11160478 ~ 11160744 (+)
G942917 NA non-coding downstream 64061 11161299 ~ 11161528 (+)
G942921 NA non-coding downstream 66898 11164136 ~ 11244458 (+)
G941893 NA other upstream 848138 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2238207 8845565 ~ 8855476 (+)
G940376 NA other upstream 2441123 8651504 ~ 8652993 (+)
G940313 NA other upstream 2552777 8532540 ~ 8540867 (+)
G940247 NA other upstream 2653869 8439480 ~ 8439775 (+)
G942702 NA other downstream 13488 11110726 ~ 11111336 (+)
G944957 NA other downstream 2290312 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2967310 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 3058116 14154784 ~ 14202999 (+)
G946644 NA other downstream 3213337 14310575 ~ 14314318 (+)

Expression


Co-expression Network