G942915 (LOC100136012)


Basic Information

Item Value
gene id G942915
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11160478 ~ 11160744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1075378
gggttaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcatcttggtgagaaggcaacaactgttggtgcaattattagaaaatggaagaagttcaagatgatggtcaatcacccttggtctggggctccatgcaagatctcacctcgtggggcatcaatgatcatgaggaaggtgatggatcagcccagaactacatggcaggacctggtcaatgacctgaagaaagctgggaccacagtatcaaagaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1075378 True 267 lncRNA 0.48 1 11160478 11160744

Neighbor

gene id symbol gene type direction distance location
LOC110535263 lrrc30 coding upstream 2083 11155680 ~ 11158395 (+)
LOC110535262 LOC106579655 coding upstream 95879 11025637 ~ 11064599 (+)
vapa vapa coding upstream 488486 10666207 ~ 10671992 (+)
LOC110535252 LOC106579643 coding upstream 521056 10631364 ~ 10639422 (+)
LOC110536547 LOC106579641 coding upstream 536458 10395438 ~ 10624020 (+)
LOC110535264 LOC106579657 coding downstream 17588 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding downstream 174766 11335510 ~ 11335585 (+)
LOC110535269 LOC106579659 coding downstream 339228 11499972 ~ 11541498 (+)
LOC110535272 LOC106579661 coding downstream 384713 11545457 ~ 11548240 (+)
LOC110535274 LOC100136506 coding downstream 637335 11798079 ~ 11885766 (+)
G942722 NA non-coding upstream 17343 11142893 ~ 11143135 (+)
G942719 NA non-coding upstream 25100 11135140 ~ 11135378 (+)
G942693 LOC106579654 non-coding upstream 63240 11093644 ~ 11097238 (+)
G942691 NA non-coding upstream 68393 11091869 ~ 11092085 (+)
G942688 NA non-coding upstream 72221 11087990 ~ 11088257 (+)
G942917 NA non-coding downstream 555 11161299 ~ 11161528 (+)
G942921 NA non-coding downstream 3392 11164136 ~ 11244458 (+)
G943032 NA non-coding downstream 181346 11342090 ~ 11342434 (+)
G943044 NA non-coding downstream 215762 11376506 ~ 11378471 (+)
G942702 NA other upstream 49142 11110726 ~ 11111336 (+)
G941893 NA other upstream 914972 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 2305041 8845565 ~ 8855476 (+)
G940376 NA other upstream 2507957 8651504 ~ 8652993 (+)
G940313 NA other upstream 2619611 8532540 ~ 8540867 (+)
G944957 NA other downstream 2226806 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2903804 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 2994610 14154784 ~ 14202999 (+)
G946644 NA other downstream 3149831 14310575 ~ 14314318 (+)
G946643 NA other downstream 3157264 14318008 ~ 14318623 (+)

Expression


Co-expression Network