XLOC_028592 (cnot4b)


Basic Information

Item Value
gene id XLOC_028592
gene name cnot4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12243698 ~ 12286067 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055456
AATGTAAGATGGTGGTTAGGAGGCACTGTCGCTCTACAGAGAGGCTGTAACACACAAGACTTGGTGTTTTCGCATCAAATCACACAGGAGCAGGGACAAACCATCCCAGGAATTTATACTGTGACCTGCTGTGCTAGACCTGAGCCGCTCACATAGATTGTATTTGCTGTGAATCTGACTGTTCACATAGACAGGGCTCTGCCTCTAAACTGTGAGAACACACCGCTCTTTTCTCTGCGTCGCGTGCCATAGGATGTCCTGCAGCCCTGAGGTGAAGGAGGACCCCATGGAGTGCCCACTGTGCATGGAACCGTTGGAGATTGATGACGTCAACTTCTTCCCCTGCACCTGCGGCTATCAGATCTGCCGCTTCTGCTGGCATCGCATACGCACAGACGAGAACGGCCTCTGTCCGGCCTGCAGAAAGCCCTATCCAGAAGACCCTGCAGTATACAAACCTCTCTCTCAGGAGGAACTTCAGAGGATAAAGAACGAGAAGAAGCAGAAGCAGAACGAGCGGAAACAGAAGATCACAGAGAACCGCAAACACCTCTCCAGCGTGCGAGTCGTCCAGCGAAACCTGGTGTTTGTTGTGGGCCTTTCACAGAGACTCGCCGACCCTGAGGTCTTAAAAAGGCCGGAGTACTTTGGGAAGTTTGGGAAGATCCATAAGGTGGTCATCAATAACAGCACTTCTTATGCTGGTTCACAGGGTCCTAGTGCCAGTGCCTACGTCACTTACATTCGCTCAGAAGATGCCCTTAGAGCTATACAGTGTGTTAACAATGTTGTAGTAGATGGCAGAACACTTAAGGCTTCTTTAGGTACAACTAAATACTGCAGTTATTTTCTAAAAAGCATGCAGTGCCCTAAACCAGACTGTATGTATCTTCACGAGCTGGGAGACGAAGCTGCTAGTTTTACAAAAGAAGAAATGCAGGCAGGGAAACATCAGGAATATGAACAGAAACTCTTACAGGAACTCTACAAAACAAATCCCAACTTCCTACAGAGCTCGACAGGAACAGGAGAGAAGACAAAGAGCAAATCAGGCACATCACAGAGTTCCAACAGTAACAGCAAAGAAGCGTGGCCTTCGTTACAAACCACAGGGAAGATGCCCAATGGGCTTTCAGAACACCATAAGACTCCACCCTTAGATGGAGGCTCGGACTCTGAAAACATGACTCCAGACGGCCTAGACTCTGACCTGGGCCTTGGTTCTATCACTGGTCTGCCCTCCTTCACGTCGAACTGTGAACCCGTCAGCCCAACTAGCAAACCTTCAGATTCCATCAGTTTAAGTAATGGAGAAACATCACAAATTTCCGGCAATGACTCTCCATCACCCCCTCCTGGCCTGAGTAAGCCATCTCTAGTGGTGCCTAACTGTGTGGCAGGGTTGACAGTACGGTCGCCTTTCGAAGGAGCAGCGGCTGAGTCACAATCATTGTTTTCAGACAACAGCAACTTCCGGCACCCCAATCCCATCCCCAGCGGTCTGCCTGGCTTTCCTAATTCCCTTCACAACAACTCCGATTGGCCCACTGCCCCAGAACCACAGAGCCTCTTCACATCAGATACCATACCAGTGTCGTCCTCTACAGACTGGCAAGCAGCCTTTGGCTTCGGCTCTTCAACGAAGCAACAGGATGACGACCTCGGCTTTGACCCATTTGACGTCACCCGTAAGGCACTGGCAGATCTCATTGAGAACGAACTCACTGTGGAAGACTCCTTTCCCATGACCATCACAAAGTCGGCGCCAGTAATGCCCCATGGGCCATTACTCGGCCCTCTCCACAACGCTCCATCCATAAAAAGCCCACTTCAGCCCCCAACTTCCTCACACTTTGCCCCAAACTCCAGTCTGCCCTCACGGGGCTTCTCCCATCTCCCGCACCGCACAGTCTACAACTCGTTCAGCTTTCCCGGGCAAGCGCAGAGCTCTCGGCACAGCTGGATGGGGATGCCCATGCGCAATAACCTCCCGCACTTGAATCACAGCACAGGCCCTTCTTCTGCTGCACAGCACAGCAGCTTTTTGGACTTGAACTTGGCTCCACAGCAGCAACATCATCACAGTACAGGGCTCGGTGGGATCCATATGACAGAAAACAGCACCTCAgtagaaagtctgaatgtgaAGGAGTGGCAGGACGGGCTCAGAGCACTTTTACCCAACATCAACATCAACTTCGGAGGACTCCCTAACTCCTCTTCATCTTCGTCATCTtcatcctcttcctcctccagCATGAACCACACAGGCGGCATCTCACACAGCCTTAGCTGGGACGGCACAGCCAGCTGGATGGACCCCGCCATCATCACAgGTATCCCAGCGTCCTCAGGCAACAGTCTGGACTCTCTGCAGGATGACAATCCTCCACACTGGCTCAAATCCTTGCAGGCGCTCACAGAGATGGATGTCCCTTCTGGGTCCACAGTGCCCCCTCAGCCCCCTCACAGCGGCCCCTTTGGAGCCCAGTTCCCCCACAGAGCCGGCTGGAGCCCTTATCCGACCACAGCCACAGCCAACCCCGCCACCCAATTCCACTCGCCTCCCCCAGGCTTCCAGACCGCCTTCAGAGCCTCAGCCCAGGCCTCCACAGATCTGCTACAGAGTGCCGGCATGGAACGCCATTAGGAACTGTGAAATCCTATTCCCCTCATCCGAAGAACAGCCGACAAACACGGCAGATGAATCAGTGCAAAGTTATTAACAAAATAACAAGATTATGTATTGTTTTCTCATTTCATCTTGCACTCATTTTTAGTCCGTTCCTGGATTTATGTTTCTCACGGTTTAGTCTTTCTTTATTCCTTGTTGCCCAATCGCTCTGTTCCAGCTTTCCCATTTTCAAACGGTTGCAAAAACGAGACAGTTGTCACAGCAAAGCATAACAAGTAAGTTTTCCACAGTTACGGGGCCTAAAGTAACTCCTTTGTAATTCGTCATGATAACGTCAATGCATCATTTGTGGAAATCCGAATCACGCCAGATGCGTTTCCCAGAAATTCCATTGGAACCAAATGGAAGgaatcaaacaaaaagtgtctTGATTTAGAACTAAGTGTCTGCCTTCAAAagctaaaccaaaaaaaaaagaacagcacCTGTTCGTCCATCTGCACAACAGAGGAGCTTCTTCCTGTGAGAGTCCTTAAAGCCATGCTTCGAAGCAATCAAGTAGATACCCGAAATCAAAACAGGGCTTCAGATTTTGTGTTTGATCAGAAGAGTACTTGACTTCCATTATTCTGACGGATCAAAGGCATAATGATGGCGAAGCAAAAAGCACTTTTACCCAGGATCTTTAGCCTTCAACTTTGTTCTACCTTTTTGTGCCCTTTGGTAAAAGGGAGATGCATTTTTAAGGGTTCTAAACATGGTGCCCACTCTCGACGTGGCATTTAGCTGTAGATGGATGCAGGCCTTTGCCTTTTGACCCTTCCACCAAATTGCCTGGTTGGTCAAAGGGTCTTCCGCTTTAGATCGCAACTCTTCGGTTAAACTCTGTATCAGAGGGCGGCGCGTTGCGAAATTAAGAGGAATTGAGAGTTGGGTAACACGGACCCTTTTCAATCGCAGGGCTCGTGTAGCAAGAGACACCACTGTGTGGTGTTTCTCATAGCTGCCTCGACGTACGTGGCCTAATCAGTGTTTACGCTTGACTATGCTCCCTGAAGAAACTTGAAGGTGTGCGAGGTGTCCAGAGTTTTGGGAAATAGATCTAGAGTTGAAGTGTGGCGACATTTTAAATGTGAGTTCATAGAGTGAAACTTGGTGGGTGATTGAGATTTGGTGGGTGAGTGAAGAAAATAATCTGTGTTAAAGGGCTTTCGAATGATAATGGCAGAGCGAACATTACAGAAGTTGATGTGATCATGCTGTTTGTGTCTGTAGCAGTTACTTTGCACGtttattttttcaacaaaaaatcgATACAACGGAAAGCTGGGATAGCGGCGCTACTGGGCAACTAAGGTTTTGGCAATACACTGGGGTCTTGTCTGGGACTGTTAACACTGTTCGTCACTCCTACTTGCACCCCCCCACAAACACGACCCTAccatttcaattttttaaatggTCTTAATCCTTTATCAGCTGTGTAGGTTGCCGCCGAACACTCGGCATTCAACAGTATTCAAGTGGAACGAATGAAACGAAACCAATACAGTTTAACTTTGGGGTTTACACAGTGCTAAAatgtaagaaacaaaaaaaaagttgaaggAAGTTGTACCTCTCTAAAGGTCTGGAGGAACATAAAACtaaatcttaaataaaagacGAAATGTCATGCTTGA
>TCONS_00055457
ATGTAAGATGGTGGTTAGGAGGCACTGTCGCTCTACAGAGAGGCTGTAACACACAAGACTTGGTGTTTTCGCATCAAATCACACAGGAGCAGGGACAAACCATCCCAGGAATTTATACTGTGACCTGCTGTGCTAGACCTGAGCCGCTCACATAGATTGTATTTGCTGTGAATCTGACTGTTCACATAGACAGGGCTCTGCCTCTAAACTGTGAGAACACACCGCTCTTTTCTCTGCGTCGCGTGCCATAGGATGTCCTGCAGCCCTGAGGTGAAGGAGGACCCCATGGAGTGCCCACTGTGCATGGAACCGTTGGAGATTGATGACGTCAACTTCTTCCCCTGCACCTGCGGCTATCAGATCTGCCGCTTCTGCTGGCATCGCATACGCACAGACGAGAACGGCCTCTGTCCGGCCTGCAGAAAGCCCTATCCAGAAGACCCTGCAGTATACAAACCTCTCTCTCAGGAGGAACTTCAGAGGATAAAGAACGAGAAGAAGCAGAAGCAGAACGAGCGGAAACAGAAGATCACAGAGAACCGCAAACACCTCTCCAGCGTGCGAGTCGTCCAGCGAAACCTGGTGTTTGTTGTGGGCCTTTCACAGAGACTCGCCGACCCTGAGGTGATTCAGCAAAACACACAATCTTTCCTGACCTCTGTGTAATTGATGCTCTTCACACTCAAGATAAACGACTTAGGAAGTCCACTGCTCCAAAAACTGTGACATTCATCTCACTCAGCCGCTCTCGAAATTCATCCACACATGGTTTCTGATGCTTTATAACACTTTCACTGCAAGCAAGATA

Function

symbol description
cnot4b Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT4 (CCR4-NOT transcription complex subunit 4).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0030014 CCR4-NOT complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1164 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT4 (CCR4-NOT transcription complex subunit 4).

Ensembl:

ensembl_id ENSDARG00000007639

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055456 False 4317 mRNA 0.49 13 12243698 12286067
TCONS_00055457 True 808 processed_transcript 0.50 3 12275114 12286066

Neighbor

gene id symbol gene type direction distance location
XLOC_028591 NA coding downstream 2125 12240134 ~ 12241573 (-)
XLOC_028590 NA coding downstream 4887 12230026 ~ 12238811 (-)
XLOC_028589 CR792454.1 coding downstream 18873 12122794 ~ 12224825 (-)
XLOC_028588 mrps33 coding downstream 137659 12102267 ~ 12106039 (-)
XLOC_028587 braf coding downstream 141662 12074776 ~ 12102036 (-)
XLOC_028593 NA coding upstream 2698 12288765 ~ 12297450 (-)
XLOC_028594 il17ra1a coding upstream 31394 12317461 ~ 12323228 (-)
XLOC_028595 rergla coding upstream 95668 12381735 ~ 12388535 (-)
XLOC_028596 arhgef39 coding upstream 115079 12401146 ~ 12477278 (-)
XLOC_028597 AL844512.1 coding upstream 309613 12595680 ~ 12595804 (-)
XLOC_028586 NA non-coding downstream 182309 12059984 ~ 12061389 (-)
XLOC_028585 NA non-coding downstream 185067 12057808 ~ 12058631 (-)
XLOC_028600 NA non-coding upstream 455295 12741362 ~ 12744353 (-)
XLOC_028605 BX119963.4 non-coding upstream 587915 12873982 ~ 12883327 (-)
XLOC_028609 NA non-coding upstream 702911 12988978 ~ 12989698 (-)

Expression


Co-expression Network