XLOC_028594 (il17ra1a)


Basic Information

Item Value
gene id XLOC_028594
gene name il17ra1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12317461 ~ 12323228 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055458
TTTTTTAGGTCGACTGTTTCCTGCACCTACGCCAACATTGTTAACTTGTCGAACGCTTGTCGTCTGTTAAACCTCTTAAAGCGTGCATTCGTTTACATTTACTGAGGTTTATGTCGGATTAAACGCGAATAATGAGTTTCTTGTACCTTAAAGGTGCTGTGTTTTTCACCTTTATACCTGTAGTGCTGAATCTCGGACTTCTGGATGATGGGAATTCTCTGAACTGTACACAAGAGGAAGTACCTTGTACAGCAGTTTTTAATAATTGCTTGTATAAAGGATGGTTAATTCCTTCAGCTTTCACTCCCAGCGCACCAGATGATTTCAAAGTGAGTTTTGATGTCAGAGAAAACATGAAAGGTGATTTGGAGCCAGTGATTGTGGCAGAATGGAAAGCAAAAGATGATGGAAGCATAAGCCATTTGAATGGAACAGAGCTTAGTGTGATGAAATCATCCACCAACGAACATCTATGCGTTCATTACAATTTCCTCAAACCCTTTAAGACCATGAGAAATCGTGCTGGAGAAAAGTGGTCTTTTTCTCTGGATAAAGTTGTGGTAGATCCAGGCAGCACATATGTCGTGACTGTCTCAAACCTTCCCAAGCCAAATTTAGACCACACCTTTTATAATGTTAGAAAAACATTTCAAGTTCCAGGTTGTGATGATCCTTTGATGCGAAAGACCAAGATCTGTTTTGAGAGAGGGGATACATGGCAACCCAATATTACAGTAGGGAGAACCAAAGATCCACATGGCAAAGATATTCTGTACGTTGCATTCAATCCCGGAGAGAATGTTGAAAAATACAACGTCTTTGTAAATTGCAATAGGAAAGAAACGAAGACTCTTTATAATgAGAGCAAGACTTTATTAAATGTGACATATGACTTGAAGAACTGGTCACGCACATGCTGTAATTTTGATGTTCAGATCCAGCCATTTTTCCAAAAGTGTGCCAATGACTGTCGTCGAAAGAGCCACAGTTTTAACATTTGTGTTCCTGCTGTCCCTCCAGAGAATAATTGCACAATCTGGATCATTTGGGTTGGATTATGCCTCTTACTTTGTGGCATTGGTGTTTTCGCAGTTTATCTGCGCTGCAGGAAACCACCACCAGCTGCAGAAAAGCCACCAGAAAAAGCTCCCCTGGAAACAACGCCAGTTCCACCCGGCCCACGCTCCATATTGATCATCTACTCTAGAGATCATCCTCTTTACACAGACATCGTGCTAAAGCTCTGTGCCTTCCTCCGGGCCAAATGTGGCACTGATGTCATGCTGGACCTACTGGACACAACTTGGCTCGGCACCATCGGCCGACTGCAGTGGATTGAGCAAAAAAAGCGACACATCGAGCAGTCTTCAAACAAGATCTTGATCCTCTGCTCCCGAGGGGTTCAAGCCAAATGGGGGGCAATTTGCGGAGAGCCTCCCGTCCTCCTTCGGGAAGATGTGCACTCTCCGGTTGGCGACATGCTGACTCTCGCCCTACAGCTGATCACACCTGATATGCAGCGTCCGGCGTCCTATGGGAAGTATTTGGTGGCTTATTTTGACGATGTAAGCACTGAAGCCGATGTGCCGTCTTTGTTTGACATTGCGGTCAAATACAAGCTGATGAAGCATTTCGAAGAGCTCTACTTCCGCATCCTCGATGTGGAGAAGTATCAGCAGGGGACGGAGCGCTGCATCAAGGATATCGGAAAGGATGAGTACTTCAACTGCCCCTCAGGGAAAGCCTTGAGGAACGCAATCGAAACCTTCCAGGCGCACCAAATGAAGAATCCCGACTGGTTTGAGAATGAGTTTGTGAACAGCGAGGATGAAGCGAGAGTAGAAACGGATGCACTTTTTGAGGTCCCACAAATATATCAATTAATACCAATGTGTAACATCGGACCTCCCATCCTAGTCAAAGAAGTGGACGTCCGTCCAGAAACCAAGAGCGTTTGTGCTGTAATTCCTGAAATTAATGAGACGCCCGAAGAGTCGTCCATGTTGATTGTTAATCCAAGAGTCCATCCAAAATACAGTGAAGTAGTTTCCTATCATCCCGCTGTGGAATGTTCTATTGAAATACCAAGTGTGGCACCACAACTCTACCCAGGTCTCCTTGCTGAACCAGTATCAGTTCCAGTGGAAACCTCATATCCTGATGCATTCCCAATGGGAGAACCATCAGACATTTGTCTCACTGACTTGACAGCACCTCCACCTTCAATGGAGGACAACTTCCATCTGTATCAAGATATGGACATGTCCCAGCCTGTAGAGATGGAGGAAAGTGAAATGGAAGGAGCCTCTGAAACAAGGCCGTCACGGGGGTCTGATCAGGGATACGGATCCAGATATTCCACAGTGAGGGAGGAACGCAAGTATCAAGAGGAACATTCCTCTCTGGCCAAATTACAAATGGAGCTTTTCCTGAACAGCCCCATTTCTTCAGATTTCTTCACTAAAACAATGAGGAGCTGATTTGGGTTGAATGTTTTGGTTCTTGCTCAGCCTTAGCTGACACTCCCAAAACATTCAATCTGTTTGTGTCAGGAATGACAACAGGAAACAGATGGGCAATGAGTTCAACCATCGGCTATTTTATAAAGGATTACTTGTTACACATCACACATGATTCGACATGAACACAAGAGTGTGTGATTGGTTCACTTTTACTGTGGAGCAGAACAAGTACCTTGGTaaacagcacagcacagcacatgATTTTTAAGCTTATGTTTAGCTACTGAACACACGTCTAAGTAATTTGGGCTTGCAATGTTACTTttgtccttgtttttttttttttataggaatTGCTGTATTATATTGCACTAGAGTTACTTTCTTAATAGTTTATTCTAGATAAATCTCTCAACTTTGGAAGTCTGTATATAATAGGAGTTTGTTTCTAAATTTATAAAGCAGCATTCTTTGGTAA
>TCONS_00055459
AACCTCTTAAAGCGTGCATTCGTTTACATTTACTGAGGTTTATGTCGGATTAAACGCGAATAATGAGTTTCTTGTACCTTAAAGGTGCTGTGTTTTTCACCTTTATACCTGTAGTGCTGAATCTCGGACTTCTGGATGATGGGAATTCTCTGAACTGTACACAAGAGGAAGTACCTTGTACAGCAGTTTTTAATAATTGCTTGTATAAAGGATGGTTAATTCCTTCAGCTTTCACTCCCAGCGCACCAGATGATTTCAAAGTGAGTTTTGATGTCAGAGAAAACATGAAAGGTGATTTGGAGCCAGTGATTGTGGCAGAATGGAAAGCAAAAGATGATGGAAGCATAAGCCATTTGAATGGAACAGAGCTTAGTGTGATGAAATCATCCACCAACGAACATCTATGCGTTCATTACAATTTCCTCAAACCCTTTAAGACCATGAGAAATCGTGCTGGAGAAAAGTGGTCTTTTTCTCTGGATAAAGTTGTGGTAGATCCAGGCAGCACATATGTCGTGACTGTCTCAAACCTTCCCAAGCCAAATTTAGACCACACCTTTTATAATGTTAGAAAAACATTTCAAGTTCCAGGTTGTGATGATCCTTTGATGCGAAAGACCAAGATCTGTTTTGAGAGAGGTGAGAGATTAGCTTATTGATGATAAATATACCCATAcacatttgtatgtttatatagagtagtcaacattttaagtgtatcaaaaaataatcataataactaaaactgttaaaaatagttttaggaca

Function

symbol description
il17ra1a Predicted to enable interleukin-17 receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in immunodeficiency 51. Orthologous to human IL17RA (interleukin 17 receptor A).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030368 interleukin-17 receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-242 Predicted to enable interleukin-17 receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in immunodeficiency 51. Orthologous to human IL17RA (interleukin 17 receptor A).

Ensembl:

ensembl_id ENSDARG00000058244

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055458 False 2940 mRNA 0.43 11 12317461 12323228
TCONS_00055459 True 768 lncRNA 0.37 6 12321818 12323159

Neighbor

gene id symbol gene type direction distance location
XLOC_028593 NA coding downstream 20011 12288765 ~ 12297450 (-)
XLOC_028592 cnot4b coding downstream 31394 12243698 ~ 12286067 (-)
XLOC_028591 NA coding downstream 75888 12240134 ~ 12241573 (-)
XLOC_028590 NA coding downstream 78650 12230026 ~ 12238811 (-)
XLOC_028589 CR792454.1 coding downstream 92636 12122794 ~ 12224825 (-)
XLOC_028595 rergla coding upstream 58507 12381735 ~ 12388535 (-)
XLOC_028596 arhgef39 coding upstream 77918 12401146 ~ 12477278 (-)
XLOC_028597 AL844512.1 coding upstream 272452 12595680 ~ 12595804 (-)
XLOC_028598 mgst1.1 coding upstream 392467 12715695 ~ 12718367 (-)
XLOC_028599 mgst1.2 coding upstream 395737 12718965 ~ 12725513 (-)
XLOC_028586 NA non-coding downstream 256072 12059984 ~ 12061389 (-)
XLOC_028600 NA non-coding upstream 418134 12741362 ~ 12744353 (-)
XLOC_028605 BX119963.4 non-coding upstream 550754 12873982 ~ 12883327 (-)
XLOC_028609 NA non-coding upstream 665750 12988978 ~ 12989698 (-)
XLOC_028611 NA non-coding upstream 700279 13023507 ~ 13024168 (-)

Expression


Co-expression Network