G943616


Basic Information

Item Value
gene id G943616
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 11887634 ~ 11889472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1076133
CAAGAAATTGCCCGTTTAGATATAAAATGTAGCAAGCAATATCTACAGCAATAGTTCTACATATTTTTTCTGACCTCATAGATACTGTAATAGGCCCTTGAGCTAGTGACCAACAAAAACGTCTGGTTGAAAAATGCTCTTTGTTGTTAAGAGGAAGGTTGGTTTGTCGATCCCCAGTCATTGTCTTGGTCATAGTGTTCGTTGAGTTTTGATAGGCCTTCACCTTTTATTCAGTCACAGACTTTTAACCATGAGAAACATGTAACCAAATCCCTTGTACCTAACTAAGTCTGCAAGAGGTGGAACCAAAATCTTTCTGTTTGAATATTTTTTGGAGGGGTTGTAATGTGTCCCAATTCTCTCTCAGACTGGTCTCATTACCTAGTtttaacatagtaaatgtatatatggacactcaaattagtatgatatgttacgtttggtatggttacataagaccaTGAAAGTAGGATGGGTGGGCGTGTAATATGAATGCCTAGCAACCCTCAGGTCGCGAGTTTTAATCTCACAtttttgctaattagcaacttttttaaactactttttagctactttgcaactacttaacatgttagctaacccttcctctaacgttaacccttttagctaacccttcccctaaacctttaacctaactccgaaacttaaccctaaccacaaaactagctaacattagccatcaAGCTAGagttcgtaacatatcataccttTTGCAAATTCGTTACATATAATACGAATTTTAGTTTGTAATGGATCATATGAAGTGGgtaatggacatccacaaatgtaccatacgaaatgtaacatatACTAAATGTATGTCTTGGGTTTACATAAAGAATAATACGaactgctctgagaccaggttgtctcACTTTGCTGTTAACATTTGTAACCTTTGACTTTGATTTGAGAAGCTAGAGAAAATCTTCTGACATTTTTGCCCTTTTATTTGACCTGCTAGGACCTTTTTACCACCATTTTTTCAAGAGTTAAGTGGATGCATTTGATGAGGAGGGAGAGCAAGGTATGCAAAGTGAGCTATTAGAATTCAAATTGTAAATCTGTTTCTTTCCAAATAGTGGTCTTGATGCACACTGAGCATCACATGCAGTGTTGCAGTGTTAACTTAAGGgtttaattttttatattttgttgGTCGGTGTTATGATGAGTTATACAATACCAATCGGCGGTTTTAAAGTTTTAGCCACGATGGGAAAGGCAAGTATTAGTCAGTTTTTTTCAtcattgtctgttttttttttaactctggTGCCATTTTTAAGGATTCTACCGTCTCTAGTTGAGTCTTAAATCTGAGAGTTTAGGGCCAGGATGAGATGGAATGGGAGCTGGACTTAACACAGGTCTTTTCAAATGAATATTTTAGCctcctctgcattGGATATCGGGTCAAATCTATTCTTACCAATACTCACGTTGTGGTTCATGATGACAAGGGTGAAGTTTTGGAATATAAACAGCATGTGATATCAGCAACATTGCTATCTGGGAGTGTCGGACGGAAAACCTGAGGTGTTCTGATGTTGTTGTGCCTTTATTTTCCTCGTTGTTGCTGAAGCAACCACTGTGGTGcccctctctttgtttatttgttaTTAGTACCTGAC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1076133 True 1655 lncRNA 0.37 3 11887634 11889472

Neighbor

gene id symbol gene type direction distance location
LOC110535274 LOC100136506 coding upstream 1868 11798079 ~ 11885766 (+)
LOC110535272 LOC106579661 coding upstream 339394 11545457 ~ 11548240 (+)
LOC110535269 LOC106579659 coding upstream 346136 11499972 ~ 11541498 (+)
LOC110535264 LOC106579657 coding upstream 389796 11178332 ~ 11497838 (+)
trnaa-ugc-48 NA coding upstream 552049 11335510 ~ 11335585 (+)
LOC110535275 NA coding downstream 190791 12080263 ~ 12080894 (+)
LOC110535276 LOC106579583 coding downstream 287441 12176913 ~ 12191408 (+)
LOC110535277 LOC106579584 coding downstream 303933 12193405 ~ 12246357 (+)
LOC110535283 LOC106579606 coding downstream 375593 12265065 ~ 12274786 (+)
LOC110535281 riok3 coding downstream 385810 12275282 ~ 12283258 (+)
G943634 NA non-coding upstream 56464 11830619 ~ 11831170 (+)
G943604 NA non-coding upstream 108507 11777447 ~ 11779127 (+)
G943593 NA non-coding upstream 128406 11758853 ~ 11759228 (+)
G943586 NA non-coding upstream 132702 11754693 ~ 11754932 (+)
G943186 NA non-coding upstream 269542 11617757 ~ 11618092 (+)
G943615 NA non-coding downstream 91 11889563 ~ 11891174 (+)
G943653 NA non-coding downstream 17944 11907416 ~ 11908721 (+)
G943661 NA non-coding downstream 27508 11916980 ~ 11917189 (+)
G943662 NA non-coding downstream 29159 11918631 ~ 11919023 (+)
G943710 NA non-coding downstream 89709 11979181 ~ 11979592 (+)
G942702 NA other upstream 776298 11110726 ~ 11111336 (+)
G941893 NA other upstream 1642128 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3032197 8845565 ~ 8855476 (+)
G940376 NA other upstream 3235113 8651504 ~ 8652993 (+)
G940313 NA other upstream 3346767 8532540 ~ 8540867 (+)
G944957 NA other downstream 1498078 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2175076 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 2265882 14154784 ~ 14202999 (+)
G946644 NA other downstream 2421103 14310575 ~ 14314318 (+)
G946643 NA other downstream 2428536 14318008 ~ 14318623 (+)

Expression


Co-expression Network