XLOC_028595 (rergla)


Basic Information

Item Value
gene id XLOC_028595
gene name rergla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12381735 ~ 12388535 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055460
CTCAGCGCGAGTCTGTGGAGATCAACACACGGCTCTGAGAGAGCAGAGGATGAGGATTCACTGACAGTCCGTGCAGAACACACAGTAAATAAAATGTGGAGCTTGCGCTAAACTGAAGAGACGCGTTTCAGTTTCATTCCTTTATCATTCGGGGTAACGCTTCAAGATCGCAATGAATGACATTAAAGTTGCAGTTCTGGGATCCGAGGGTGTCGGAAAATCAGCACTTATTGTGAGATTTCTAACCAGGCGCTTCATTGGTGAATATGCATCATCATCAGAGTGCATTTACAGAAAGCGCATGTCCATTGATGCAAGACAGCTTAATCTAGAACTGCATGACCCCTGTTCTCAGCCATGCGATGGAAAGTCGACTCTTAATGAGCAGATCCACTGGGCCGATGGCTTTGTGGTTGTTTATGACATCAGCGATCGTTCCTCCTTCCTCACGGCCAAAGCTATCGTTCACCTGATCCGTGAGCTTCACCTGGGAGCCACTAAAAGGGATTCAGACTCTGTGATTTTCCTGGTGGGCAATAAGCAAGACTTGTGCCACATGCGTGAGGTGGACAGGGAAGAGGGCCAGAAGCTGGCATCTGAGGGCCGCTGTCAGTTTTACGAGCTCTCCGCTGCCGAACATTACCAGGAAGTGCTGCTCATGTTCTCAAAGATTGTGCGCAATGCCAGTCTGGGAAGCAAAGCCAAGGAGCGCCGCCGTCGACCCAGCGGCTCAAAATCCATGGCCAAACTCATCAACAACGTCTTCGGAAAACGACGGAAATCTGTTTGAGGAAAGAATACTTGGACAATTGTTGTTGGACTGACGTATGAGATGtgtcacatttgtttatgtttccTCACTGCTTGTTAATGTCTTGGTCACTACTGGGTGAAACTCACATATTTGGACATATTTCACCCAAAAGTCCAACAAAATGTGCATCGACTAAATAAAATGAAGCCTGTTTTTAGGATATTTTGCATtgcaacaatattttatttacagttaagTACATTTACCTCATAAAAGCTTGAtactgtgataaaaaaaaattatatacatattatattttgtttaatgtttcatcATAGTATGATGATGTAGAATTGACTCAATTCAAATATCTAgagtcttgttttgttttgtgtgttctgTTTTTTGCATTGCAATAGGAACATGctgtctgttgttgttgttaataatagtGTAACAATGCAACACAATTCAAATGGGcttctttttatttataaaaaatataatatttttaatgtaatgacaTGTAATTAGATAGTTCACCCTATAATGAAAATGTACCCACTCTCAAGTAGTTAAAAATCTTCAGGAGTTTCTTTCATCTAttggacacaaaagaaggtattgtGAAgaatggtttacaaaaaaaaaaaaaaaaagcttctggtTCTCagaattctttttaaatatttacaaaataaataacctcaaaaaaatttagaaaattaACGAAAGGAGAGCAAATGATGACACcattttcatttatgggtgaacaatttttttatgtttttatctgTGCACAGCCTCACATCTCCACTCTTTGCCTTAAATGTCTGTTTGCTCACTTAGGATGTTTTAAACAACACATTTAAAGGAGAGACCGCCAAACTCAAGGTCAACTCAGTAGCTGTAAAATATTGGTAGGCTTACTATGTAGCCACAGATGAAATGTCTTATCGTTCACTTAAAATGGATTGTGCAGTATAAGATACTGTTTCTTCACTGTTTGATGTAATTTAATCACTTTCTACATGTAAGTTGCAAGTGATGAATGATTAAGGTAGTTTATGGATTCTGAAAATTCATGTAAAGCAAAAACATCTGCATTAAAATGCGATAAT

Function

symbol description
rergla Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-198 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Orthologous to human RERGL (RERG like).

Ensembl:

ensembl_id ENSDARG00000019396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055460 True 1875 mRNA 0.38 5 12381735 12388535

Neighbor

gene id symbol gene type direction distance location
XLOC_028594 il17ra1a coding downstream 58507 12317461 ~ 12323228 (-)
XLOC_028593 NA coding downstream 84285 12288765 ~ 12297450 (-)
XLOC_028592 cnot4b coding downstream 95668 12243698 ~ 12286067 (-)
XLOC_028591 NA coding downstream 140162 12240134 ~ 12241573 (-)
XLOC_028590 NA coding downstream 142924 12230026 ~ 12238811 (-)
XLOC_028596 arhgef39 coding upstream 12611 12401146 ~ 12477278 (-)
XLOC_028597 AL844512.1 coding upstream 207145 12595680 ~ 12595804 (-)
XLOC_028598 mgst1.1 coding upstream 327160 12715695 ~ 12718367 (-)
XLOC_028599 mgst1.2 coding upstream 330430 12718965 ~ 12725513 (-)
XLOC_028600 NA coding upstream 352827 12741362 ~ 12744353 (-)
XLOC_028589 CR792454.1 non-coding downstream 156910 12122794 ~ 12224825 (-)
XLOC_028586 NA non-coding downstream 320346 12059984 ~ 12061389 (-)
XLOC_028605 BX119963.4 non-coding upstream 485447 12873982 ~ 12883327 (-)
XLOC_028609 NA non-coding upstream 600443 12988978 ~ 12989698 (-)
XLOC_028611 NA non-coding upstream 634972 13023507 ~ 13024168 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G114616 NA non-coding CI01000020 null 5091057 ~ 5094428 (-)
rainbow trout (Oncorhynchus mykiss) G113741 NA non-coding NC_048566.1 CM023220.2 11371263 ~ 11373006 (-)