G943749


Basic Information

Item Value
gene id G943749
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12054535 ~ 12054922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1076271
cccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtacaatatacgactgattgttgtcctatggacagagtctccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1076271 True 388 lncRNA 0.45 1 12054535 12054922

Neighbor

gene id symbol gene type direction distance location
LOC110535274 LOC100136506 coding upstream 168769 11798079 ~ 11885766 (+)
LOC110535272 LOC106579661 coding upstream 506295 11545457 ~ 11548240 (+)
LOC110535269 LOC106579659 coding upstream 513037 11499972 ~ 11541498 (+)
LOC110535264 LOC106579657 coding upstream 556697 11178332 ~ 11497838 (+)
LOC110535275 NA coding downstream 25341 12080263 ~ 12080894 (+)
LOC110535276 LOC106579583 coding downstream 121991 12176913 ~ 12191408 (+)
LOC110535277 LOC106579584 coding downstream 138483 12193405 ~ 12246357 (+)
LOC110535283 LOC106579606 coding downstream 210143 12265065 ~ 12274786 (+)
LOC110535281 riok3 coding downstream 220360 12275282 ~ 12283258 (+)
G943748 NA non-coding upstream 342 12053902 ~ 12054193 (+)
G943713 LOC106590371 non-coding upstream 63245 11981857 ~ 11991290 (+)
G943710 NA non-coding upstream 74943 11979181 ~ 11979592 (+)
G943662 NA non-coding upstream 135512 11918631 ~ 11919023 (+)
G943661 NA non-coding upstream 137346 11916980 ~ 11917189 (+)
G943750 NA non-coding downstream 218 12055140 ~ 12055517 (+)
G943785 NA non-coding downstream 59905 12114827 ~ 12115161 (+)
G943787 NA non-coding downstream 62157 12117079 ~ 12122615 (+)
G943817 NA non-coding downstream 109346 12164268 ~ 12164536 (+)
G943820 LOC106583515 non-coding downstream 114077 12168999 ~ 12169446 (+)
G942702 NA other upstream 943199 11110726 ~ 11111336 (+)
G941893 NA other upstream 1809029 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3199098 8845565 ~ 8855476 (+)
G940376 NA other upstream 3402014 8651504 ~ 8652993 (+)
G940313 NA other upstream 3513668 8532540 ~ 8540867 (+)
G944957 NA other downstream 1332628 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 2009626 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 2100432 14154784 ~ 14202999 (+)
G946644 NA other downstream 2255653 14310575 ~ 14314318 (+)
G946643 NA other downstream 2263086 14318008 ~ 14318623 (+)

Expression


Co-expression Network