Gene
RNA
| Item | Value |
|---|---|
| gene id | G943787 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 12117079 ~ 12122615 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: sodium channel protein type 4 subunit alpha B-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1076312 | True | 335 | lncRNA | 0.44 | 2 | 12117079 | 12122615 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535275 | NA | coding | upstream | 36185 | 12080263 ~ 12080894 (+) |
| LOC110535274 | LOC100136506 | coding | upstream | 231313 | 11798079 ~ 11885766 (+) |
| LOC110535272 | LOC106579661 | coding | upstream | 568839 | 11545457 ~ 11548240 (+) |
| LOC110535269 | LOC106579659 | coding | upstream | 575581 | 11499972 ~ 11541498 (+) |
| trnaa-ugc-48 | NA | coding | upstream | 781494 | 11335510 ~ 11335585 (+) |
| LOC110535276 | LOC106579583 | coding | downstream | 54298 | 12176913 ~ 12191408 (+) |
| LOC110535277 | LOC106579584 | coding | downstream | 70790 | 12193405 ~ 12246357 (+) |
| LOC110535283 | LOC106579606 | coding | downstream | 142450 | 12265065 ~ 12274786 (+) |
| LOC110535281 | riok3 | coding | downstream | 152667 | 12275282 ~ 12283258 (+) |
| rmc1 | mic1 | coding | downstream | 161266 | 12283881 ~ 12295047 (+) |
| G943785 | NA | non-coding | upstream | 1918 | 12114827 ~ 12115161 (+) |
| G943750 | NA | non-coding | upstream | 61562 | 12055140 ~ 12055517 (+) |
| G943749 | NA | non-coding | upstream | 62157 | 12054535 ~ 12054922 (+) |
| G943748 | NA | non-coding | upstream | 62886 | 12053902 ~ 12054193 (+) |
| G943713 | LOC106590371 | non-coding | upstream | 125789 | 11981857 ~ 11991290 (+) |
| G943817 | NA | non-coding | downstream | 41653 | 12164268 ~ 12164536 (+) |
| G943820 | LOC106583515 | non-coding | downstream | 46384 | 12168999 ~ 12169446 (+) |
| G943827 | LOC106579585 | non-coding | downstream | 129365 | 12251980 ~ 12252197 (+) |
| G943829 | NA | non-coding | downstream | 129631 | 12252246 ~ 12253319 (+) |
| G943877 | NA | non-coding | downstream | 197161 | 12319776 ~ 12343587 (+) |
| G942702 | NA | other | upstream | 1005743 | 11110726 ~ 11111336 (+) |
| G941893 | NA | other | upstream | 1871573 | 10245109 ~ 10245506 (+) |
| LOC118937463 | NA | other | upstream | 3261642 | 8845565 ~ 8855476 (+) |
| G940376 | NA | other | upstream | 3464558 | 8651504 ~ 8652993 (+) |
| G940313 | NA | other | upstream | 3576212 | 8532540 ~ 8540867 (+) |
| G944957 | NA | other | downstream | 1264935 | 13387550 ~ 13394875 (+) |
| G946426 | ramp3 | other | downstream | 1941933 | 14064548 ~ 14065869 (+) |
| LOC110535304 | NA | other | downstream | 2032739 | 14154784 ~ 14202999 (+) |
| G946644 | NA | other | downstream | 2187960 | 14310575 ~ 14314318 (+) |
| G946643 | NA | other | downstream | 2195393 | 14318008 ~ 14318623 (+) |
