G943817


Basic Information

Item Value
gene id G943817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 12164268 ~ 12164536 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1076342
cctgtaaatagcccatccaactacctacctcatccccatatttgtttttgtttttctgctcttttgcacaccagtatttctacttgcacatcctcatctgcacatatatcactccagtgtaaattgctaaattgcaaTTACTTACTACTAATtacgcctctatggcctatttattgctttacctccttacttcattttcacacactgtatacagatttttctattgtgttattgtttgtttatcccatgtgtaactcagtgttgttgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1076342 True 269 lncRNA 0.36 1 12164268 12164536

Neighbor

gene id symbol gene type direction distance location
LOC110535275 NA coding upstream 83374 12080263 ~ 12080894 (+)
LOC110535274 LOC100136506 coding upstream 278502 11798079 ~ 11885766 (+)
LOC110535272 LOC106579661 coding upstream 616028 11545457 ~ 11548240 (+)
LOC110535269 LOC106579659 coding upstream 622770 11499972 ~ 11541498 (+)
trnaa-ugc-48 NA coding upstream 828683 11335510 ~ 11335585 (+)
LOC110535276 LOC106579583 coding downstream 12377 12176913 ~ 12191408 (+)
LOC110535277 LOC106579584 coding downstream 28869 12193405 ~ 12246357 (+)
LOC110535283 LOC106579606 coding downstream 100529 12265065 ~ 12274786 (+)
LOC110535281 riok3 coding downstream 110746 12275282 ~ 12283258 (+)
rmc1 mic1 coding downstream 119345 12283881 ~ 12295047 (+)
G943787 NA non-coding upstream 41653 12117079 ~ 12122615 (+)
G943785 NA non-coding upstream 49107 12114827 ~ 12115161 (+)
G943750 NA non-coding upstream 108751 12055140 ~ 12055517 (+)
G943749 NA non-coding upstream 109346 12054535 ~ 12054922 (+)
G943748 NA non-coding upstream 110075 12053902 ~ 12054193 (+)
G943820 LOC106583515 non-coding downstream 4463 12168999 ~ 12169446 (+)
G943827 LOC106579585 non-coding downstream 87444 12251980 ~ 12252197 (+)
G943829 NA non-coding downstream 87710 12252246 ~ 12253319 (+)
G943877 NA non-coding downstream 155240 12319776 ~ 12343587 (+)
G944232 NA non-coding downstream 215914 12380450 ~ 12381622 (+)
G942702 NA other upstream 1052932 11110726 ~ 11111336 (+)
G941893 NA other upstream 1918762 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 3308831 8845565 ~ 8855476 (+)
G940376 NA other upstream 3511747 8651504 ~ 8652993 (+)
G940313 NA other upstream 3623401 8532540 ~ 8540867 (+)
G944957 NA other downstream 1223014 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 1900012 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1990818 14154784 ~ 14202999 (+)
G946644 NA other downstream 2146039 14310575 ~ 14314318 (+)
G946643 NA other downstream 2153472 14318008 ~ 14318623 (+)

Expression


Co-expression Network