Gene
RNA
| Item | Value |
|---|---|
| gene id | G945638 |
| gene name | LOC106579598 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 12855994 ~ 12977962 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| complement C1q-like protein 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1078345 | True | 1728 | lncRNA | 0.43 | 3 | 12855994 | 12977962 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hs6st1b | LOC106579591 | coding | downstream | 313736 | 12454097 ~ 12542258 (-) |
| LOC118937466 | LOC106579607 | coding | downstream | 488587 | 12366214 ~ 12367407 (-) |
| LOC110536549 | LOC106579607 | coding | downstream | 489867 | 12348249 ~ 12366127 (-) |
| LOC110535279 | LOC106579586 | coding | downstream | 512059 | 12295274 ~ 12343935 (-) |
| LOC110535278 | LOC106579585 | coding | downstream | 595845 | 12245448 ~ 12260149 (-) |
| LOC110535292 | LOC106579599 | coding | upstream | 116598 | 13094560 ~ 13319271 (-) |
| xrcc2 | LOC106579578 | coding | upstream | 348909 | 13326871 ~ 13337384 (-) |
| LOC110535297 | LOC106579566 | coding | upstream | 836162 | 13814124 ~ 13817469 (-) |
| LOC110536603 | nme8 | coding | upstream | 840860 | 13818822 ~ 13823897 (-) |
| LOC110535299 | LOC106579561 | coding | upstream | 877209 | 13855171 ~ 13860831 (-) |
| G945551 | NA | non-coding | downstream | 76949 | 12740370 ~ 12779045 (-) |
| G945550 | NA | non-coding | downstream | 115969 | 12739821 ~ 12740025 (-) |
| G945515 | NA | non-coding | downstream | 174619 | 12681030 ~ 12681375 (-) |
| G945480 | NA | non-coding | downstream | 229708 | 12625967 ~ 12626286 (-) |
| G945479 | NA | non-coding | downstream | 230393 | 12625398 ~ 12625601 (-) |
| G945733 | NA | non-coding | upstream | 53727 | 13031689 ~ 13089169 (-) |
| G945827 | NA | non-coding | upstream | 236219 | 13214181 ~ 13214578 (-) |
| G945912 | NA | non-coding | upstream | 371798 | 13349760 ~ 13349970 (-) |
| G945986 | NA | non-coding | upstream | 511813 | 13489775 ~ 13489976 (-) |
| G945991 | NA | non-coding | upstream | 519407 | 13497369 ~ 13497674 (-) |
| G945345 | LOC105027308 | other | downstream | 461856 | 12393397 ~ 12394138 (-) |
| LOC110536548 | LOC106579654 | other | downstream | 1775477 | 11061866 ~ 11143146 (-) |
| G942483 | LOC106590343 | other | downstream | 2111317 | 10743314 ~ 10744677 (-) |
| G942454 | NA | other | downstream | 2213351 | 10639629 ~ 10642643 (-) |
| ly86 | NA | other | upstream | 1334550 | 14308595 ~ 14315733 (-) |
| mtfr1 | LOC106579534 | other | upstream | 1906373 | 14884317 ~ 14897579 (-) |
| G947750 | NA | other | upstream | 2228469 | 15206431 ~ 15209597 (-) |
| G947894 | LOC106579543 | other | upstream | 2387988 | 15365950 ~ 15366301 (-) |
| pan3 | pan3 | other | upstream | 2473365 | 15439415 ~ 15455911 (-) |
