G944675 (LOC106579599)


Basic Information

Item Value
gene id G944675
gene name LOC106579599
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13116622 ~ 13118471 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1077318
CTGAGCTTCTCCTCAGTGTCTCCCAGGTGTGGTAGCATGCTGTTCTGAGTGTCAACGGTGTTTCTGCTAGACTGAGGGATATCATGGGCCTGCCTTTCCGAAGTTTGGGCATAAGGTGTCATTGGACCCAGTTCAAAGGGATCGTGAATCTGCGTTTGACCACCGTGATGATTCGACTGCGGCAGAGAGAAACTTTCATCCGACATTCCTGGGTGCTTAGCTGTCTGCGAGCCCTGGGCGCTTGGACAGGCAAACCCCTGGGACATGGGCGTCGGTCTGGAGCATAGTCGATTGAAGGCATCAGGGCCTGCTTCTGGCCGCGGCGTCCCTGGAGCTTGTGCGTAAGGGTCAGCGAGGAGCGGTCTTGGTGTTCCGGGTTGTTGGGCATACGGGTCCATGTTCCTTTGACTACCGGGGGATTTGGGAAACCTATCCCCTGGGGCTGGTCTGGGGGTACCTGGCATGGAAGCATAAGGATCCATGGAGTGAGATGGAGACGGTCTGTGATTGGGTGGGTGCTGCTGGGGGAACTGGTCTAGACGAAGGCTAGGCGGCGTCTGCAGGTATGAGGGATCTGAGTGTGGCCTTGGGGTGCCGGGAGGTTGAGCATAGCTATCAGAGTGAGGTCTGGGGGTGCCTGGTGGTTGGGTGAAAGGGTCAGACATCTGCTGTGAATAATCCGGTCTCGGGGTAGATGGCGCTTGTGCATACGGGTTTCTGTGAGGGTGTCTAATCATTGGCATGGGTTGAGAGAAATGGCCCTCCTGGGTTTGGCACATCATCTTGGACTCGTTGGGGAACCCTTCCCCCATGAGTGGCCGGGGGGTGAGAGGCTGCTGGGCGTAAGGGTCGGCCTGTATTCCTTGGGGAAAGCCATCAGATGGCCCTCGTTTAAGTCCCCCAGGCATAGGGCCACCGTAGGGCTCTTGCTGGGACTGCTGGGGAGGCATGGGGGCTTTGAACACTGAGACGGAGCCTGACTCGTTGCTGCCAGGGATGGGAGTGAGCAAGGGCCTGGAGTAGGGGTCCGAGAGGATCATGCGGTTGTGAGACATGCGCTGGTAGACCTCGGCTCGGTGTCCGCCCATCCTGGCAAAAGTCTCTCCTCCAGAAGGAGGGCTCATCATGTTGTGCCTGACCTGCTGGTGTTGCTGCTGCTCAACCAGTCCTGAAGGGCCCACCCTGGCGGGTCCCATGGGTTTAACAAAGGGGTCAGGGGGCCTGGGGGTGTCTGGCATCTTAGCATAGGGGTCAGCATTACCAGAAggcctccctcctctttcctgcATCTCCGACAGAGAGTTCTGCCGGGGCGTGGTGGATCCACCACCCCCAGGGGGCGGTCTCGGGGTGCCCACCATTTTGGCGTATGGGTCCCAGGGCGAGGACGGCCGGGAGCCTGAGGAGGAATCCGGGGAAAACATATGTGGTGACTGGGGCTGGGAGGATGGTCCCTGTTGAGGGTACGAGGTCTCCTGGGTGGGCGTCCTCGAGGACGGAGGTGGGAGCTGGGGTCTGAGGAACACGTCATCCTGTGACCCAGAGGTGGGTGTGCCCGGGAGTTGTGGTCTAGCGAAGCCATCCTTAGACACTATTGGCTGCAGTGGGGACGAGTTTCCAGACTTTCCTCCATTGCTGGGCTGAGGAGTCATGGGGCTCTGGTTACCACTATTAGGGGTTGTATCTCCACCTGCCTGACTGCTaaacagctgttgttgttgttgttgttgttgctggagcTGCTCATTTTTAACCTGCTCCAGCTTTTGAGTGGCTTCAATCTTCGCCTGCTGCTTGCTCTT

Function

NR:

description
histone-lysine N-methyltransferase 2C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1077318 True 1802 lncRNA 0.58 2 13116622 13118471

Neighbor

gene id symbol gene type direction distance location
LOC110535293 LOC106579603 coding upstream 22115 13046306 ~ 13094507 (+)
LOC110535289 LOC106579598 coding upstream 189144 12926611 ~ 12927478 (+)
LOC110535287 LOC106579593 coding upstream 239121 12807576 ~ 12877501 (+)
LOC110536550 LOC106579608 coding upstream 322250 12764626 ~ 12794372 (+)
LOC110535285 LOC106579590 coding upstream 716533 12393373 ~ 12400089 (+)
dpp6a LOC106579565 coding downstream 328213 13446684 ~ 13814449 (+)
LOC118937473 NA coding downstream 598256 13716727 ~ 13716783 (+)
mcur1 mcur1 coding downstream 705513 13823984 ~ 13848726 (+)
LOC110535301 LOC106579559 coding downstream 758330 13876801 ~ 13883235 (+)
LOC110535303 nebl coding downstream 1002929 14121400 ~ 14207555 (+)
G944714 NA non-coding upstream 31957 13084392 ~ 13084665 (+)
G944609 NA non-coding upstream 197360 12912440 ~ 12919262 (+)
G944560 NA non-coding upstream 214447 12900666 ~ 12902175 (+)
G944513 NA non-coding upstream 376398 12739981 ~ 12740224 (+)
G944512 NA non-coding upstream 377264 12738871 ~ 12739358 (+)
G944876 NA non-coding downstream 169953 13288424 ~ 13291231 (+)
G945040 NA non-coding downstream 365202 13483673 ~ 13483980 (+)
G945043 NA non-coding downstream 370007 13488478 ~ 13488711 (+)
G945046 NA non-coding downstream 372749 13491220 ~ 13491487 (+)
G945052 NA non-coding downstream 379047 13497518 ~ 13497884 (+)
G942702 NA other upstream 2005286 11110726 ~ 11111336 (+)
G941893 NA other upstream 2871116 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 4261185 8845565 ~ 8855476 (+)
G940376 NA other upstream 4464101 8651504 ~ 8652993 (+)
G940313 NA other upstream 4575755 8532540 ~ 8540867 (+)
G944957 NA other downstream 269079 13387550 ~ 13394875 (+)
G946426 ramp3 other downstream 946077 14064548 ~ 14065869 (+)
LOC110535304 NA other downstream 1036883 14154784 ~ 14202999 (+)
G946644 NA other downstream 1192104 14310575 ~ 14314318 (+)
G946643 NA other downstream 1199537 14318008 ~ 14318623 (+)

Expression


Co-expression Network