G945043


Basic Information

Item Value
gene id G945043
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13488478 ~ 13488711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1077697
CACTGGGAATCTAGGCTGATCAATTCAGTCTTTTGGTACTTTAAAATCACTTTAGGCTTTTCTTTTGCTGAGTCTGCCTCCATATGTTGTCTTGAAATGGCCATAGTGTTTGTTTCTTCTGAGTCTGCCTCCATATGCTGTCTTAAAATGGCCGTGGTGTTTGTCTGTGCTCATGCTTGGACAGGGGCACCTAGAGACGGaggacatacacacatacattcacactCTTTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1077697 True 234 lncRNA 0.44 1 13488478 13488711

Neighbor

gene id symbol gene type direction distance location
LOC110535293 LOC106579603 coding upstream 393971 13046306 ~ 13094507 (+)
LOC110535289 LOC106579598 coding upstream 561000 12926611 ~ 12927478 (+)
LOC110535287 LOC106579593 coding upstream 610977 12807576 ~ 12877501 (+)
LOC110536550 LOC106579608 coding upstream 694106 12764626 ~ 12794372 (+)
LOC110535285 LOC106579590 coding upstream 1088389 12393373 ~ 12400089 (+)
LOC118937473 NA coding downstream 228016 13716727 ~ 13716783 (+)
mcur1 mcur1 coding downstream 335273 13823984 ~ 13848726 (+)
LOC110535301 LOC106579559 coding downstream 388090 13876801 ~ 13883235 (+)
LOC110535303 nebl coding downstream 632689 14121400 ~ 14207555 (+)
LOC110535304 NA coding downstream 666073 14154784 ~ 14202999 (+)
G945040 NA non-coding upstream 4498 13483673 ~ 13483980 (+)
G944876 NA non-coding upstream 197247 13288424 ~ 13291231 (+)
G944679 NA non-coding upstream 367325 13027187 ~ 13121153 (+)
G944675 LOC106579599 non-coding upstream 370007 13116622 ~ 13118471 (+)
G944714 NA non-coding upstream 403813 13084392 ~ 13084665 (+)
G945046 NA non-coding downstream 2509 13491220 ~ 13491487 (+)
G945052 NA non-coding downstream 8807 13497518 ~ 13497884 (+)
G945200 NA non-coding downstream 184596 13673307 ~ 13673574 (+)
G945259 NA non-coding downstream 275075 13763786 ~ 13765449 (+)
G945298 NA non-coding downstream 336830 13825541 ~ 13825893 (+)
G944957 NA other upstream 93603 13387550 ~ 13394875 (+)
G942702 NA other upstream 2377142 11110726 ~ 11111336 (+)
G941893 NA other upstream 3242972 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 4633041 8845565 ~ 8855476 (+)
G940376 NA other upstream 4835957 8651504 ~ 8652993 (+)
G946426 ramp3 other downstream 575837 14064548 ~ 14065869 (+)
G946644 NA other downstream 821864 14310575 ~ 14314318 (+)
G946643 NA other downstream 829297 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 829954 14318665 ~ 14329336 (+)

Expression


Co-expression Network