XLOC_028601 (dera)


Basic Information

Item Value
gene id XLOC_028601
gene name dera
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12755136 ~ 12766418 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055471
AAATGATTGGCTGAGAGCGTTGACGTATCAGTGACTAGCAAGCAATCCAGGAAGACGGCAAGTAGCGTAAGCTGTCAACGTGAGGAGCTGCAGCTTGTCAAACAACCggatttttacaatttatttcatTCAGTGATTTACATTTCATCATGTCTGCGAGAAATCCAGGAATGCACCTTGATCTGGAATGGGTGTCAAAAGTCAGGGTCAACACTCAGGCTGTTCATAAAAGAGCTCAGCAGATCCAGGGACGCAAAATGGCCAAGAAGCAGTGGCAGGCTGCCTGGCTGCTAAAGGCTGTCACATGCATCGATCTGACGACCCTCGCCGGTGACGATACTCCTTCCAATGTCCATCGACTGTGTATGAAGGCCACACAGCCCATAAGACATGATCTGCTGAAGAGCATGGACATGCATGACAAAGGCATCTCgactgcagctgtgtgtgtgtacccATCACGGGTGGCTGACGCTGTGAAGTCTCTGAAAGCTGCCAACTCCAGTCTTCCTGTTGCGTCGGTGGCCACTGGTTTCCCTGCTGGACAGACGCCACTGAAGACCCGTCTCGAGGAAGTCCAGATGGCTGTGAAGGACGGTGCTGCAGAAATTGATATCGTCATAAACCGGACATTGGCACTCACTGGACAgtgggcagCTCTCTATGAGGAGATCCGGCAGTTCAGAGAGGCCTGTGGAGACGCTCATATGAAAAGCATCCTGGCGGTAGGAGAACTGGGAACTTTCACAAACGTCTATAAGGCCAGTCTGGTGTCCATGATGGCAGGATCTGACTTCATCAAGACTTCAACCGGCAAAGAGTCAGTCAATGCAACCTACCCGGTAGCCATTGTAATGGTGCGTGCCATTCGTGACTACTACCTGAAGACCGGCCACAAAGTGGGTTTCAAGCCAGCGGGAGGCATCCGAACAGCGCAGGAGTCTGTGGTTTGGCTGACGCTGATGAAGGAAGAACTCGGAGACGACTGGCTCAATCCACACCTTTTCCGACTCGGAGCAAGCAGCCTGTTAGCTGACATCGAGCGGCAGATTTACCACTACGTGACCGGAAGATATCCTGCCTATCATGAACTTCCCATGGCCTAAATCTGAGGGAaagaaaaatgcaaaaacatGGAGGTTCGGGAGAAAGAAAGGTGTTCAGATCAGCCAAGAATGCAATAACTAAGCCATCACGTGTGTTTATAAGGTCAATTATGAAAAAAGTTACTGTGTTAAGGACTTCATTTGTTAGTGTTAGTAAATGATTaggctaacatgaattagcaatGAGTAATATTTACACTATGAAATCTTGTTTCATCACAGAATATCTTGCAGTTTTAAACGCACAATTGTTTGTTTCACAAAATGATGAGAAAAAGTTTGCATGATTTAAATACAGAATTGCAAGAAGATATAAATCCTGGAAATGTGATTAGCAA

Function

symbol description
dera Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase).

GO:

id name namespace
GO:0009264 deoxyribonucleotide catabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004139 deoxyribose-phosphate aldolase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway

ZFIN:

id description
ZDB-GENE-041010-200 Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase).

Ensembl:

ensembl_id ENSDARG00000005897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055471 True 1444 mRNA 0.47 9 12755136 12766418

Neighbor

gene id symbol gene type direction distance location
XLOC_028600 NA coding downstream 10783 12741362 ~ 12744353 (-)
XLOC_028599 mgst1.2 coding downstream 29623 12718965 ~ 12725513 (-)
XLOC_028598 mgst1.1 coding downstream 36769 12715695 ~ 12718367 (-)
XLOC_028597 AL844512.1 coding downstream 159332 12595680 ~ 12595804 (-)
XLOC_028596 arhgef39 coding downstream 277858 12401146 ~ 12477278 (-)
XLOC_028602 helb coding upstream 3533 12769951 ~ 12781182 (-)
XLOC_028603 irak3 coding upstream 15716 12782134 ~ 12795489 (-)
XLOC_028604 hmga2 coding upstream 52854 12819272 ~ 12862087 (-)
XLOC_028605 BX119963.4 coding upstream 107564 12873982 ~ 12883327 (-)
XLOC_028606 msrb3 coding upstream 124250 12890668 ~ 12914307 (-)
XLOC_028593 NA non-coding downstream 457686 12288765 ~ 12297450 (-)
XLOC_028591 NA non-coding downstream 513563 12240134 ~ 12241573 (-)
XLOC_028590 NA non-coding downstream 516325 12230026 ~ 12238811 (-)
XLOC_028609 NA non-coding upstream 222560 12988978 ~ 12989698 (-)
XLOC_028611 NA non-coding upstream 257089 13023507 ~ 13024168 (-)
XLOC_028613 NA non-coding upstream 579254 13345672 ~ 13393170 (-)
XLOC_028614 NA non-coding upstream 710811 13477229 ~ 13478821 (-)

Expression


Co-expression Network