G945306


Basic Information

Item Value
gene id G945306
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 13863544 ~ 13869217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1077968
GTTCACAGATATCTAGAGTTCATTTTTGATCAGCTCTGTCACAGAGCTTCTGTGCTGCATCTGTTTGAGTCTGACCATTTAGTGGTCATCAGAGAAAATCCTCTCTACAAAGGCATTTGAGCCTGGCACACTGAGGACAAATGAGACAATCCTGAACATGTTGATCAAGTTGGCTTTCCCTAGGTTTTGAAAAACTGCCACCCACTTCTCACTGGTGGATTTTGTGGTATCCTGTCTGTATTTCCTTCCGGCTAGCACAAAAAAAATTCATTTTGAGGGCAACCACCACCTGCTCCAGGTCAGTGAAGGAGAGATACTCATAGAAGCTGGTCTGTTTCACCATTACATTTTCTGGTGAGAAATCAAACCACTTGTCAATGTATGTAATGACAGTGTCATAGACCCTCAAAGTCCCGTTGCTGCTTGGACCTTTGTGATGACAATTGTTTGTCCATCAGCTGCTTGGTCTGGTATCCAAAAAAAAGCTGTCCTGTTTCCGCTGAAGCATCTTCATTGTGAACTTTTGGACTTCCTCGTAAACATCTGCACTGTCGTCTGTGATATTACTTTCTTTAAGGACGTACTGATGAAAAACTGTCAATATTTAAATAACCTACATTTATTCACTCTGATAGGGTTGGAtcctgtcaggtgcgtgaatgaggacccaaaagcgaattaacaaaacagagtttctttaatgacaaaacacacgtaggctcagatggacaggcagattccgacaggacaggacaaggttgcagcaaacacgacgatagtctggttcaggcatgagtaacacaaacgagaatccgacaaagacagaagcagaaacagagagagatatagggacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagttagagaagacaaggaacagctgggggaaagaggggaagaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1077968 True 946 lncRNA 0.43 3 13863544 13869217

Neighbor

gene id symbol gene type direction distance location
mcur1 mcur1 coding upstream 14818 13823984 ~ 13848726 (+)
dpp6a LOC106579565 coding upstream 49095 13446684 ~ 13814449 (+)
LOC118937473 NA coding upstream 146761 13716727 ~ 13716783 (+)
LOC110535293 LOC106579603 coding upstream 769037 13046306 ~ 13094507 (+)
LOC110535289 LOC106579598 coding upstream 936066 12926611 ~ 12927478 (+)
LOC110535301 LOC106579559 coding downstream 7584 13876801 ~ 13883235 (+)
LOC110535303 nebl coding downstream 252183 14121400 ~ 14207555 (+)
LOC110535304 NA coding downstream 285567 14154784 ~ 14202999 (+)
LOC118937467 NA coding downstream 339933 14209150 ~ 14210346 (+)
ssr1 ssr1 coding downstream 343198 14212415 ~ 14220500 (+)
G945298 NA non-coding upstream 37651 13825541 ~ 13825893 (+)
G945259 NA non-coding upstream 98095 13763786 ~ 13765449 (+)
G945200 NA non-coding upstream 189970 13673307 ~ 13673574 (+)
G945052 NA non-coding upstream 365660 13497518 ~ 13497884 (+)
G945046 NA non-coding upstream 372057 13491220 ~ 13491487 (+)
G946278 NA non-coding downstream 62470 13931687 ~ 13931898 (+)
G946280 NA non-coding downstream 65835 13935052 ~ 13935276 (+)
G946304 NA non-coding downstream 83257 13952474 ~ 13952696 (+)
G946357 NA non-coding downstream 124102 13993319 ~ 13993572 (+)
G946371 NA non-coding downstream 132626 14001843 ~ 14002162 (+)
G944957 NA other upstream 468669 13387550 ~ 13394875 (+)
G942702 NA other upstream 2752208 11110726 ~ 11111336 (+)
G941893 NA other upstream 3618038 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 5008107 8845565 ~ 8855476 (+)
G940376 NA other upstream 5211023 8651504 ~ 8652993 (+)
G946426 ramp3 other downstream 195331 14064548 ~ 14065869 (+)
G946644 NA other downstream 441358 14310575 ~ 14314318 (+)
G946643 NA other downstream 448791 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 449448 14318665 ~ 14329336 (+)

Expression


Co-expression Network