G946371


Basic Information

Item Value
gene id G946371
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14001843 ~ 14002162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1079123
ctCAAACAACAAAAGTGCAgtagaagaaaacaaaaacatttgtgcTAGAAACAAAAAAGAACAGAATAGTTTTTTGATAACGTACCTGGGCTGCTCTGGCCCCTGGTCATTAGGGATCAGTCTGTTGTGGAGGGGGTCCAGAAATGTGATAATGTGTGCAGTGTTGTATGGGCCTAGGATTGCATGATGGTGAAGGACGCCGTTTTGACTAATAGCTGTACACATTGTTATGTTGCCACCAAGTTGTCCAAGTTGATGATGGCACGGTGTCCGATGATATTTCTGCCGCGGCCCCTTGTTTTTGCAAGGTTGAAACCTGC

Function

NR:

description
uncharacterized protein LOC109894116

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1079123 True 320 lncRNA 0.45 1 14001843 14002162

Neighbor

gene id symbol gene type direction distance location
LOC110535301 LOC106579559 coding upstream 118608 13876801 ~ 13883235 (+)
mcur1 mcur1 coding upstream 153117 13823984 ~ 13848726 (+)
dpp6a LOC106579565 coding upstream 187394 13446684 ~ 13814449 (+)
LOC118937473 NA coding upstream 285060 13716727 ~ 13716783 (+)
LOC110535293 LOC106579603 coding upstream 907336 13046306 ~ 13094507 (+)
LOC110535303 nebl coding downstream 119238 14121400 ~ 14207555 (+)
LOC110535304 NA coding downstream 152622 14154784 ~ 14202999 (+)
LOC118937467 NA coding downstream 206988 14209150 ~ 14210346 (+)
ssr1 ssr1 coding downstream 210253 14212415 ~ 14220500 (+)
LOC118936448 NA coding downstream 316580 14318742 ~ 14321570 (+)
G946357 NA non-coding upstream 8271 13993319 ~ 13993572 (+)
G946304 NA non-coding upstream 49147 13952474 ~ 13952696 (+)
G946280 NA non-coding upstream 66567 13935052 ~ 13935276 (+)
G946278 NA non-coding upstream 69945 13931687 ~ 13931898 (+)
G945306 NA non-coding upstream 132626 13863544 ~ 13869217 (+)
G946372 NA non-coding downstream 172 14002334 ~ 14002603 (+)
G946374 NA non-coding downstream 1018 14003180 ~ 14003477 (+)
G946377 NA non-coding downstream 4444 14006606 ~ 14007317 (+)
G946390 NA non-coding downstream 17162 14019324 ~ 14019760 (+)
G946545 NA non-coding downstream 110131 14112293 ~ 14112513 (+)
G944957 NA other upstream 606968 13387550 ~ 13394875 (+)
G942702 NA other upstream 2890507 11110726 ~ 11111336 (+)
G941893 NA other upstream 3756337 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 5146406 8845565 ~ 8855476 (+)
G940376 NA other upstream 5349322 8651504 ~ 8652993 (+)
G946426 ramp3 other downstream 62386 14064548 ~ 14065869 (+)
G946644 NA other downstream 308413 14310575 ~ 14314318 (+)
G946643 NA other downstream 315846 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 316503 14318665 ~ 14329336 (+)

Expression


Co-expression Network