G946377


Basic Information

Item Value
gene id G946377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14006606 ~ 14007317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1079129
tctctatcagttttgcacatcgagagactgacatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtttggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccatcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgaagctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttccattttggtttcatctgaccagagcaccttcttccatatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaataaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcat

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1079129 True 712 lncRNA 0.43 1 14006606 14007317

Neighbor

gene id symbol gene type direction distance location
LOC110535301 LOC106579559 coding upstream 123371 13876801 ~ 13883235 (+)
mcur1 mcur1 coding upstream 157880 13823984 ~ 13848726 (+)
dpp6a LOC106579565 coding upstream 192157 13446684 ~ 13814449 (+)
LOC118937473 NA coding upstream 289823 13716727 ~ 13716783 (+)
LOC110535293 LOC106579603 coding upstream 912099 13046306 ~ 13094507 (+)
LOC110535303 nebl coding downstream 114083 14121400 ~ 14207555 (+)
LOC110535304 NA coding downstream 147467 14154784 ~ 14202999 (+)
LOC118937467 NA coding downstream 201833 14209150 ~ 14210346 (+)
ssr1 ssr1 coding downstream 205098 14212415 ~ 14220500 (+)
LOC118936448 NA coding downstream 311425 14318742 ~ 14321570 (+)
G946374 NA non-coding upstream 3129 14003180 ~ 14003477 (+)
G946372 NA non-coding upstream 4003 14002334 ~ 14002603 (+)
G946371 NA non-coding upstream 4444 14001843 ~ 14002162 (+)
G946357 NA non-coding upstream 13034 13993319 ~ 13993572 (+)
G946304 NA non-coding upstream 53910 13952474 ~ 13952696 (+)
G946390 NA non-coding downstream 12007 14019324 ~ 14019760 (+)
G946545 NA non-coding downstream 104976 14112293 ~ 14112513 (+)
G946549 NA non-coding downstream 106766 14114083 ~ 14114567 (+)
G946616 NA non-coding downstream 232519 14239836 ~ 14240314 (+)
G946635 NA non-coding downstream 269722 14277039 ~ 14278140 (+)
G944957 NA other upstream 611731 13387550 ~ 13394875 (+)
G942702 NA other upstream 2895270 11110726 ~ 11111336 (+)
G941893 NA other upstream 3761100 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 5151169 8845565 ~ 8855476 (+)
G940376 NA other upstream 5354085 8651504 ~ 8652993 (+)
G946426 ramp3 other downstream 57231 14064548 ~ 14065869 (+)
G946644 NA other downstream 303258 14310575 ~ 14314318 (+)
G946643 NA other downstream 310691 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 311348 14318665 ~ 14329336 (+)

Expression


Co-expression Network