G946549


Basic Information

Item Value
gene id G946549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14114083 ~ 14114567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1079303
TTGTCATGGATGATGTAAATGTAACAGTTGTTAAAGTActatgtgaatttcaccaggttcatatatcaatatgttgtgttgatttgttatgcatgcctgcatcctgggagaaggggagtgtgtacttacgttttgcccggcgtgctcgtgctcaaatcattttgatgcactgagagagaaagaggcgacgattctcagaacagatgtgctctacaaatgttttatttccttttggatgcagatgcaagatgcagagagtcagttctgcttgattaaaactacctgatctccaaagtccacgttTATGGTCTctatcaaccacacacaacgcagagttacagcggtgTAGTATAGCACCGgctacattggtgccgtgacccggattcatcGTTGATCGACGTCAGCTCAATCACCGCGGCGCTGCTGCTCTAGAGACTAATTATATCATTGAGGTACTCTTGCCGCCTTGTGGCAGAAATCGgaac

Function

NR:

description
zonadhesin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1079303 True 485 lncRNA 0.45 1 14114083 14114567

Neighbor

gene id symbol gene type direction distance location
LOC110535301 LOC106579559 coding upstream 230848 13876801 ~ 13883235 (+)
mcur1 mcur1 coding upstream 265357 13823984 ~ 13848726 (+)
dpp6a LOC106579565 coding upstream 299634 13446684 ~ 13814449 (+)
LOC118937473 NA coding upstream 397300 13716727 ~ 13716783 (+)
LOC110535293 LOC106579603 coding upstream 1019576 13046306 ~ 13094507 (+)
LOC110535303 nebl coding downstream 6833 14121400 ~ 14207555 (+)
LOC110535304 NA coding downstream 40217 14154784 ~ 14202999 (+)
LOC118937467 NA coding downstream 94583 14209150 ~ 14210346 (+)
ssr1 ssr1 coding downstream 97848 14212415 ~ 14220500 (+)
LOC118936448 NA coding downstream 204175 14318742 ~ 14321570 (+)
G946545 NA non-coding upstream 1570 14112293 ~ 14112513 (+)
G946390 NA non-coding upstream 94323 14019324 ~ 14019760 (+)
G946377 NA non-coding upstream 106766 14006606 ~ 14007317 (+)
G946374 NA non-coding upstream 110606 14003180 ~ 14003477 (+)
G946372 NA non-coding upstream 111480 14002334 ~ 14002603 (+)
G946616 NA non-coding downstream 125269 14239836 ~ 14240314 (+)
G946635 NA non-coding downstream 162472 14277039 ~ 14278140 (+)
G946663 NA non-coding downstream 186403 14300970 ~ 14301208 (+)
G946664 NA non-coding downstream 187100 14301667 ~ 14301920 (+)
G946646 NA non-coding downstream 193134 14307701 ~ 14309785 (+)
G946426 ramp3 other upstream 48214 14064548 ~ 14065869 (+)
G944957 NA other upstream 719208 13387550 ~ 13394875 (+)
G942702 NA other upstream 3002747 11110726 ~ 11111336 (+)
G941893 NA other upstream 3868577 10245109 ~ 10245506 (+)
LOC118937463 NA other upstream 5258646 8845565 ~ 8855476 (+)
G946644 NA other downstream 196008 14310575 ~ 14314318 (+)
G946643 NA other downstream 203441 14318008 ~ 14318623 (+)
G946642 LOC106590417 other downstream 204098 14318665 ~ 14329336 (+)
G946690 NA other downstream 285295 14399862 ~ 14400273 (+)

Expression


Co-expression Network