XLOC_028605 (BX119963.4)


Basic Information

Item Value
gene id XLOC_028605
gene name BX119963.4
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 12873982 ~ 12883327 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055485
CAGCACAAATACACAGTAAAaaccaaaatacaaaaaaaaagcagtGAAAAGCACAGATtgtttaatgctttttattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttgcagGTAGTGACAACATTGACCTTTGCAGGCCCTCATTCACTTTTTTCTATCATCCCACATTCCCAACATTCCTGATGGAGCAGGCCTCACCAATCACCTCCTCAATCCAGACAGAGGCCACAAGACTGACCTTTGCTCCGCAATGGAAAACCACACTCCAGGTGAAGGACAATCTTCATGGAGCAGTAATATTGAGGGCTTGGCTGTGATTAGTTATCAGTGCGGAAGATGAACTGATGGATTGATGTGGGACAGATCACCTTCACCTGCTGAAGTTCTACAGGTCAGTCTATTGTGTGGTGTGTTTGCAGACAAATACAGCTTCTCATGTTAGTGGAGGTGGTCCAGGTCAGGCCCTCGGGGTCCCGGGAACAGCGGGACTGCGTTACGGCTCATCCCACCTGTTGCCTGAATTGGTAATATATCAAGTCATTTGTTAAAAAGGATAGGTCACCCACAACTAAGCACTCTCACTATGTTAACTCATTTAACTTCTATTTGAGTAATACTGTCAAGCTCCAGACTCTATTCAATCTTTAATTTTTAAGagtgtatttgtaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatacatatatatatatatatatatatatatatatacatacatatatatatatatatatatat
>TCONS_00055484
CAGCACAAATACACAGTAAAaaccaaaatacaaaaaaaaagcagtGAAAAGCACAGATtgtttaatgctttttattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtattttgcagGTAGTGACAACATTGACCTTTGCAGGCCCTCATTCACTTTTTTCTATCATCCCACATTCCCAACATTCCTGATGGAGCAGGCCTCACCAATCACCTCCTCAATCCAGACAGAGGCCACAAGACTGACCTTTGCTCCGCAATGGAAAACCACACTCCAGGTGAAGGACAATCTTCATGGAGCAGTAATATTGAGGTAAGAATTTTACTATAGAATATCCAATATATATAATTGATTTGAGTTGATAAGCTCTGGACTCTTCAGAACGCGATCAGAAGGTTTATTTGTGGATCACTTTGGTTAACGTTCACAGGGCTTGGCTGTGATTAGTTATCAGTGCGGAAGATGAACTGATGGATTGATGTGGGACAGATCACCTTCACCTGCTGAAGTTCTACAGGTCAGTCTATTGTGTGGTGTGTTTGCAGACAAATACAGCTTCTCATGTTAGTGGAGGTGGTCCAGGTCAGGCCCTCGGGGTCCCGGGAACAGCGGGACTGCGTTACGGCTCATCCCACCTGTTGCCTGAATTGGTAATATATCAAGTCATTTGTTAAAAAGGATAGGTCACCCACAACTAAGCACTCTCACTATGTTAACTCATTTAACTTCTATTTGAGTAATACTGTCAAGCTCCAGACTCTATTCAATCTTTAATTTTTAAGagtgtatttgtaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatacatatatatatatatatatatatatatatatacatacatatatatatatatatatatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117577

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055485 False 812 lncRNA 0.36 3 12873982 12883327
TCONS_00055484 True 930 lncRNA 0.36 2 12873982 12883327

Neighbor

gene id symbol gene type direction distance location
XLOC_028604 hmga2 coding downstream 11895 12819272 ~ 12862087 (-)
XLOC_028603 irak3 coding downstream 78493 12782134 ~ 12795489 (-)
XLOC_028602 helb coding downstream 92800 12769951 ~ 12781182 (-)
XLOC_028601 dera coding downstream 107564 12755136 ~ 12766418 (-)
XLOC_028600 NA coding downstream 129629 12741362 ~ 12744353 (-)
XLOC_028606 msrb3 coding upstream 7341 12890668 ~ 12914307 (-)
XLOC_028607 lemd3 coding upstream 33837 12917164 ~ 12930086 (-)
XLOC_028608 tmbim4 coding upstream 87928 12971255 ~ 12978925 (-)
XLOC_028609 NA coding upstream 105651 12988978 ~ 12989698 (-)
XLOC_028610 si:dkey-6a5.3 coding upstream 110586 12993913 ~ 12997587 (-)
XLOC_028597 AL844512.1 non-coding downstream 278178 12595680 ~ 12595804 (-)
XLOC_028593 NA non-coding downstream 576532 12288765 ~ 12297450 (-)
XLOC_028591 NA non-coding downstream 632409 12240134 ~ 12241573 (-)
XLOC_028590 NA non-coding downstream 635171 12230026 ~ 12238811 (-)
XLOC_028611 NA non-coding upstream 140180 13023507 ~ 13024168 (-)
XLOC_028613 NA non-coding upstream 462345 13345672 ~ 13393170 (-)
XLOC_028614 NA non-coding upstream 593902 13477229 ~ 13478821 (-)
XLOC_028615 NA non-coding upstream 606436 13489763 ~ 13490081 (-)

Expression


Co-expression Network