G946678


Basic Information

Item Value
gene id G946678
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14442754 ~ 14444395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1079441
tataccacacctcctcaggcctaACTGCATAAATATCATTTCATGACATATCTTcaataggggagagtgggtgtagTGCACAAACAAACAATAAGGTATTttcaactatgtgtgtgtgtgtgtgactcacttgCAGAGTCCAGCTTGTCCTGGCTGAGTTTGGACTCCACAGGGTGAGTCAATCTGCTGACCCCCCTCGTCCTTCTGCTCCATCACTCCACACGCGTCTGAGTCACACAGAAAGAGAAAATCAAAGTatgggcagaaagagagaaaaaaatagagtAAAGTTCTCACAGATCTGGGATCTAAGAGAGGATAAACAAGAGGTCACTCTCACCAGTCTGTGTCCCATTAGGGGGGTCTGTGTTGAACTCAACAGCATTCCTCTAT

Function

NR:

description
E3 ubiquitin-protein ligase RNF31-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1079441 True 393 lncRNA 0.45 2 14442754 14444395

Neighbor

gene id symbol gene type direction distance location
emc9 LOC106579550 coding upstream 8946 14425465 ~ 14433808 (+)
si:ch211-217a12.1 LOC106579549 coding upstream 21401 14406010 ~ 14421353 (+)
LOC110535311 LOC106579551 coding upstream 47848 14372633 ~ 14394906 (+)
oplah oplah coding upstream 81261 14340137 ~ 14361493 (+)
LOC110536553 LOC106567469 coding upstream 113264 14321792 ~ 14329490 (+)
cpa6 cpa6 coding downstream 24595 14468990 ~ 14513210 (+)
LOC110535318 LOC106579520 coding downstream 71541 14515936 ~ 14612575 (+)
csn5 csn5 coding downstream 193864 14638259 ~ 14642624 (+)
ppp1r42 ppp1r42 coding downstream 201247 14645642 ~ 14659439 (+)
LOC110535321 LOC106579524 coding downstream 215890 14660285 ~ 14663560 (+)
G946696 NA non-coding upstream 36045 14406408 ~ 14406709 (+)
G946694 NA non-coding upstream 39585 14402940 ~ 14403169 (+)
G946691 NA non-coding upstream 41732 14400804 ~ 14401022 (+)
G946649 NA non-coding upstream 106132 14334335 ~ 14336622 (+)
G946646 NA non-coding upstream 132969 14307701 ~ 14309785 (+)
G946706 NA non-coding downstream 15611 14460006 ~ 14460219 (+)
G946712 NA non-coding downstream 22883 14467278 ~ 14467614 (+)
G946951 NA non-coding downstream 69226 14513621 ~ 14513827 (+)
G946957 NA non-coding downstream 122798 14567193 ~ 14595028 (+)
G946692 NA other upstream 41110 14401254 ~ 14401644 (+)
G946690 NA other upstream 42481 14399862 ~ 14400273 (+)
G946642 LOC106590417 other upstream 113418 14318665 ~ 14329336 (+)
G946643 NA other upstream 124131 14318008 ~ 14318623 (+)
G946644 NA other upstream 128436 14310575 ~ 14314318 (+)
G946999 NA other downstream 138148 14582543 ~ 14584049 (+)
LOC110535322 LOC106579526 other downstream 221331 14665667 ~ 14715423 (+)
G947301 LOC106590396 other downstream 442219 14886614 ~ 14887282 (+)
spata13 LOC106579541 other downstream 840784 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 993286 15375660 ~ 15478222 (+)

Expression


Co-expression Network