G946955 (LOC106579521)


Basic Information

Item Value
gene id G946955
gene name LOC106579521
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14613468 ~ 14615178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1079767
TCTTTACTTGATACATACAAAAATTTCAACATCAGATTCACATTTCACgttttaaatatacatttattttgccAAAGTACATTCAAAAGAttagcagaccagaccagagcctaGCCATCATCCACACCGTAGCCCTTCTGCAGTATCTCTGAGTGGTGCAGCTCAGGACCCAGTGCTGGAATTCTTCACTGTCTACTGGCTTCACTCTGAGCAAAGCAGACACTCACTGACGCTGCCCTGCTCCTCCTCACTACACGGAGCCATTGTAGCTGGAgtaccagtctctttagctatcattccactccttgccaaaGAGACTGGCCATTCGGCAATCTTCAAATATGAACATTATATCATCACTAATGAGCTCAAAGAGATCAGATGATTTGATCCTGATTTTCTAACCCTCACAGCTATCCTCCAGTCACAATGTTTAATGCAAATTAGACTGATTGGAAAACTTCATTCATACATGCGATTGGAAACATTGGGCTTTCTGACGTAATACATGTCATTGTAAACATACATTTGGCGCTGGGAGAACAGAGGATTTACGTTTATTTCATGTTTACCACCAGCCAATGTGATCGCGTCACACCAGAGAAGCTCTTGCCATTCAAACTTCCCCAGCAGTTCATTGTGAATGCTGTAGCCTATTTCATATCCAGCAAGCAAGAGCAAGGCACttgagAAAcacccaaaaatatattttctatttctcaAAATAAGTGACCAAACTATTGTATATTGCTACTGCTGGGACGTTGGGCTAGGCTACTGGTTCAAGAGCTATAAAAGGAATACAGAGGATGGAAAAGGGCCCAGTGGAGATGCCAGCTGAGAAGGGAATAGTGAAGACAGATGTGTAAATTTGAAATTAATCCACAGGCTGGGCTATTAATCCACCAATTTTAATTCTATATGGTGTCAAATTTGCACCCACCTCATGTTCCAGAACGTTGCCATGGAAAATATGAATGTTGTTTCCAACTACCAATCAGCAACTGCGCTGTAAATCCGGCTGCATATTGAACGTTGAGATTGCCCAAAAGGTCAGTCTCTTTGGCAATGACaaggagtggcaaggagtggaatgttcgctagagactggtacccaggctaaagCCGTTGTATACAGAGACTGAAATATCTCTGCTACTACCGCTCTCATCTCCATTAGGATGTCCCCTCTGGGGGCTTTATAGGTTCAAAATGGACACACAAGCTACATTAATAGTTTTTTCAGAGTAAAAAGCACAAACATGGATGTTTTTTTGCGCTCATCTGATCCCGAGACAGATATAGCCCATGTTAATTTTGTAAAATGAGAAATAGGGATCGACTGCATATAGAAAATACACCTCTTTGGCTTTGAAATTAAGGGCACAGACTttagtcagaagtagtgcactagaaagggaTCCTATGTGTAGATGAGGTCAACAGACCTAAAAAGGTCACAGGTCATCCATGGTAGGTGGAGGGCCCGTCCCCGTCCAGGATGTCTCTAGTAACCGGCCTCTCTCTCCGGTTCTGACCAGTCCCTAACCTCTTCAGCGGGTCCGATGTGCCAGGCCGCAGCCAGGGCTCCGTGGCAACCGTCTCCACAGACACACGCCTGTCCGGGTGGTATGGGGTGGACCGCAGCGAGAGGTGGTCCCCTTCATCAGCTGACAGCCCTCC

Function

NR:

description
centrosome and spindle pole-associated protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1079767 True 1683 lncRNA 0.45 2 14613468 14615178

Neighbor

gene id symbol gene type direction distance location
LOC110535318 LOC106579520 coding upstream 893 14515936 ~ 14612575 (+)
cpa6 cpa6 coding upstream 100258 14468990 ~ 14513210 (+)
emc9 LOC106579550 coding upstream 179660 14425465 ~ 14433808 (+)
si:ch211-217a12.1 LOC106579549 coding upstream 192115 14406010 ~ 14421353 (+)
LOC110535311 LOC106579551 coding upstream 218562 14372633 ~ 14394906 (+)
csn5 csn5 coding downstream 23081 14638259 ~ 14642624 (+)
ppp1r42 ppp1r42 coding downstream 30464 14645642 ~ 14659439 (+)
LOC110535321 LOC106579524 coding downstream 45107 14660285 ~ 14663560 (+)
LOC110535322 LOC106579526 coding downstream 50489 14665667 ~ 14715423 (+)
crf crf coding downstream 178017 14793195 ~ 14794694 (+)
G946957 NA non-coding upstream 18440 14567193 ~ 14595028 (+)
G946998 NA non-coding upstream 31895 14580554 ~ 14581573 (+)
G946951 NA non-coding upstream 99641 14513621 ~ 14513827 (+)
G946712 NA non-coding upstream 145854 14467278 ~ 14467614 (+)
G947048 NA non-coding downstream 80935 14696113 ~ 14696330 (+)
G947057 NA non-coding downstream 103270 14718448 ~ 14718683 (+)
G947059 NA non-coding downstream 106788 14721966 ~ 14722170 (+)
G947207 NA non-coding downstream 127173 14742351 ~ 14742560 (+)
G946999 NA other upstream 29419 14582543 ~ 14584049 (+)
G946692 NA other upstream 211824 14401254 ~ 14401644 (+)
G946690 NA other upstream 213195 14399862 ~ 14400273 (+)
G946642 LOC106590417 other upstream 284132 14318665 ~ 14329336 (+)
G946643 NA other upstream 294845 14318008 ~ 14318623 (+)
G947301 LOC106590396 other downstream 271436 14886614 ~ 14887282 (+)
spata13 LOC106579541 other downstream 670001 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 822503 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 972652 15587284 ~ 15593900 (+)

Expression


Co-expression Network