G947252


Basic Information

Item Value
gene id G947252
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 14773369 ~ 14773842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1080118
ccattcacaTCATACCTTAACATtataattattccacaatacagcgttgtacgagatcttcagtttcttggaaatttcttgCATGAAaaagccttaatttctcagacaagaatagactgacgagtgtcagaagaaaattatttgtttctggcaattttgagcctgtaaccaaacccacaaatgctgatgctccagatactagtctagtctaaagaaggccagttgtattgcttctttaatcaccaCAACAGATTTCAGCAATGTGCTAACATAAtaacaaaagggttttctaatgatcaattagccttttaaattgataaacttggattatctaacacaacgtgccattggaacacaggagtgatggttgctgataatgggcctctgtacacctatgtagatattccataaaaaatctgccatttccagctacaatagtcatttacaactttaacaatgtctacactgtatttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1080118 True 474 lncRNA 0.35 1 14773369 14773842

Neighbor

gene id symbol gene type direction distance location
LOC110535322 LOC106579526 coding upstream 57946 14665667 ~ 14715423 (+)
LOC110535321 LOC106579524 coding upstream 109809 14660285 ~ 14663560 (+)
ppp1r42 ppp1r42 coding upstream 113930 14645642 ~ 14659439 (+)
csn5 csn5 coding upstream 130745 14638259 ~ 14642624 (+)
LOC110535318 LOC106579520 coding upstream 160794 14515936 ~ 14612575 (+)
crf crf coding downstream 19353 14793195 ~ 14794694 (+)
trnay-gua-3 NA coding downstream 56934 14830776 ~ 14830861 (+)
LOC110535327 LOC106579529 coding downstream 66811 14840653 ~ 14882192 (+)
LOC110535331 LOC106579535 coding downstream 131586 14905428 ~ 14918163 (+)
LOC118937318 NA coding downstream 224037 14997879 ~ 15016727 (+)
G947207 NA non-coding upstream 30809 14742351 ~ 14742560 (+)
G947059 NA non-coding upstream 51199 14721966 ~ 14722170 (+)
G947057 NA non-coding upstream 54686 14718448 ~ 14718683 (+)
G947048 NA non-coding upstream 77039 14696113 ~ 14696330 (+)
G947254 NA non-coding downstream 161 14774003 ~ 14777036 (+)
G947278 NA non-coding downstream 22601 14796443 ~ 14796731 (+)
G947283 NA non-coding downstream 34620 14808462 ~ 14808661 (+)
G947286 NA non-coding downstream 38489 14812331 ~ 14812543 (+)
G947302 NA non-coding downstream 115786 14889628 ~ 14890465 (+)
G946999 NA other upstream 189320 14582543 ~ 14584049 (+)
G946692 NA other upstream 371725 14401254 ~ 14401644 (+)
G946690 NA other upstream 373096 14399862 ~ 14400273 (+)
G946642 LOC106590417 other upstream 444033 14318665 ~ 14329336 (+)
G947301 LOC106590396 other downstream 112772 14886614 ~ 14887282 (+)
spata13 LOC106579541 other downstream 511337 15285042 ~ 15320246 (+)
LOC110535338 LOC106579503 other downstream 663839 15375660 ~ 15478222 (+)
rnf6 LOC106579512 other downstream 813988 15587284 ~ 15593900 (+)
atp8a2 LOC106579514 other downstream 878132 15594416 ~ 15660363 (+)

Expression


Co-expression Network